Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30281
         (636 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)               50   1e-06
SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)                   28   5.5  
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.3  
SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_7127| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.7  

>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
          Length = 112

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 25/42 (59%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
 Frame = +1

Query: 304 PFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKH-FNDD-YF 423
           PF  N  PLRRIPQ YVI TST I + + KLP+H F D+ YF
Sbjct: 2   PFKINGVPLRRIPQSYVIATSTHIDVSDVKLPEHAFADESYF 43



 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 498 EIRSSEQRKTDQKTVDEAVIKAIGARPDKK 587
           E + SEQR  DQK VD+ ++  I A P+ K
Sbjct: 63  EKKPSEQRIADQKAVDDQILPKISAVPNMK 92


>SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)
          Length = 435

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +2

Query: 386 TSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFI*AA-QNRSEDSRRGCDQS 562
           T   +NT    TSR+ +++SN +++ K   +   +  RNT      +N+ +D  +  DQ 
Sbjct: 82  TKTSRNTK---TSRKTKTSSNTKTSLKTKTSRNTKTSRNTKTKPQDKNKPQDQDKPQDQD 138

Query: 563 HRSPTRQEGAPR 598
             +  RQ   PR
Sbjct: 139 QGARPRQATRPR 150


>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 511  LSSAKPIRRQSTRL*SKPSEPDPTRR 588
            L   KP  R++T   SKP+EPD +RR
Sbjct: 1001 LDHTKPPLRKTTSNDSKPTEPDSSRR 1026


>SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +1

Query: 88  NQNSTPQ---T*EVLLPHSGENPCFIWWPSIQQACTQDPTQP 204
           NQ++ PQ   T  VL+PH G  PC   +P+         TQP
Sbjct: 94  NQSTLPQGNATQWVLIPHKGSMPCIGTFPNAINTWIIPGTQP 135


>SB_7127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 527 RSEDSRRGCDQSHRSPTRQEGAPRIPQSGFGLRRA 631
           +  D+RR   Q++R P R+   P I Q    LR+A
Sbjct: 15  KRSDARRRKRQTYRKPIRKSEGPEIEQPNSELRQA 49


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,835,533
Number of Sequences: 59808
Number of extensions: 427465
Number of successful extensions: 1299
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1298
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)