Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30281
(636 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 66 2e-11
Z83102-9|CAI79156.1| 82|Caenorhabditis elegans Hypothetical pr... 31 0.52
U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin prote... 29 2.8
U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin prote... 29 2.8
U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin prote... 29 2.8
U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin prote... 29 2.8
AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin pro... 29 2.8
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 27 8.5
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 27 8.5
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 66.1 bits (154), Expect = 2e-11
Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = +1
Query: 250 QEVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFX 426
+ VV + LP SGLLLVTGP N PLRRI Q +VI TS ++++ K+P+H ND+YF
Sbjct: 87 KRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSLKVNVSGVKIPEHINDEYF- 145
Query: 427 XXXXXXXXXXXXXEGDDIFATKKEKY 504
G +IFA+ K +Y
Sbjct: 146 -----KRKSTAQKTGKNIFASGKTEY 166
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/38 (52%), Positives = 23/38 (60%)
Frame = +3
Query: 492 KREIRSSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYL 605
K E SEQRK D KTVD ++ AI P+ K L GYL
Sbjct: 163 KTEYTVSEQRKKDIKTVDAPILAAIKKHPEHKFLFGYL 200
Score = 34.3 bits (75), Expect = 0.074
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +2
Query: 191 IRPNLKIGTVCILLAGRHAGKRLYLLEFCP 280
+R L GTV I+LAGRH GKR+ L+ P
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLP 96
>Z83102-9|CAI79156.1| 82|Caenorhabditis elegans Hypothetical
protein C54C8.12 protein.
Length = 82
Score = 31.5 bits (68), Expect = 0.52
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +2
Query: 122 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRLY 262
FYPT+ +A S G P + PN ++ V A RHAG R +
Sbjct: 26 FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPRRF 72
>U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin protein
1, isoform a protein.
Length = 953
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +2
Query: 362 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNA-KRVMTSLPQKKRNTFI*AAQNRS 532
PPP S TS NC ++ + + + SAS S +RV ++ P + + QN +
Sbjct: 498 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 557
Query: 533 EDSRRGCDQSHRS 571
+ +++ Q+ R+
Sbjct: 558 DINKKLISQTSRA 570
>U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin protein
1, isoform b protein.
Length = 1028
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +2
Query: 362 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNA-KRVMTSLPQKKRNTFI*AAQNRS 532
PPP S TS NC ++ + + + SAS S +RV ++ P + + QN +
Sbjct: 573 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 632
Query: 533 EDSRRGCDQSHRS 571
+ +++ Q+ R+
Sbjct: 633 DINKKLISQTSRA 645
>U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin protein
1, isoform c protein.
Length = 962
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +2
Query: 362 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNA-KRVMTSLPQKKRNTFI*AAQNRS 532
PPP S TS NC ++ + + + SAS S +RV ++ P + + QN +
Sbjct: 507 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 566
Query: 533 EDSRRGCDQSHRS 571
+ +++ Q+ R+
Sbjct: 567 DINKKLISQTSRA 579
>U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin protein
1, isoform d protein.
Length = 1106
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +2
Query: 362 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNA-KRVMTSLPQKKRNTFI*AAQNRS 532
PPP S TS NC ++ + + + SAS S +RV ++ P + + QN +
Sbjct: 651 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 710
Query: 533 EDSRRGCDQSHRS 571
+ +++ Q+ R+
Sbjct: 711 DINKKLISQTSRA 723
>AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin
protein.
Length = 953
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +2
Query: 362 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNA-KRVMTSLPQKKRNTFI*AAQNRS 532
PPP S TS NC ++ + + + SAS S +RV ++ P + + QN +
Sbjct: 498 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 557
Query: 533 EDSRRGCDQSHRS 571
+ +++ Q+ R+
Sbjct: 558 DINKKLISQTSRA 570
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 517 SAKPIRRQSTRL*SKPSEPDPTRRCSADTSKRLRTPS 627
S P R++ R PS+ PTRR S +R R+PS
Sbjct: 494 SPSPERQRKRR---SPSDSPPTRRLSTSPIRRRRSPS 527
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 517 SAKPIRRQSTRL*SKPSEPDPTRRCSADTSKRLRTPS 627
S P R++ R PS+ PTRR S +R R+PS
Sbjct: 494 SPSPERQRKRR---SPSDSPPTRRLSTSPIRRRRSPS 527
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,637,600
Number of Sequences: 27780
Number of extensions: 319909
Number of successful extensions: 1055
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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