Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30281
         (636 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...    64   6e-11
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...    64   6e-11
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    63   1e-10
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    30   1.5  
At3g10440.1 68416.m01252 hypothetical protein                          29   2.0  
At1g06660.1 68414.m00706 expressed protein                             29   3.4  
At1g20540.1 68414.m02559 transducin family protein / WD-40 repea...    28   6.0  

>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 32/58 (55%), Positives = 39/58 (67%)
 Frame = +1

Query: 250 QEVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 423
           + VV +  L SGLLLVTGPF  N  PLRR+ Q YVIGTST++ +    L K F+D YF
Sbjct: 105 KRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF 161



 Score = 35.9 bits (79), Expect = 0.023
 Identities = 19/57 (33%), Positives = 34/57 (59%)
 Frame = +2

Query: 101 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRLYLLE 271
           P+++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKR+  L+
Sbjct: 57  PVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLK 111



 Score = 33.1 bits (72), Expect = 0.16
 Identities = 19/48 (39%), Positives = 28/48 (58%)
 Frame = +3

Query: 489 KKREIRSSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAASDSVEP 632
           +K+EI   + +K DQK VD A+IKAI A P+ K   G   +    ++P
Sbjct: 183 EKKEI--PQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKP 228


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 32/58 (55%), Positives = 39/58 (67%)
 Frame = +1

Query: 250 QEVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 423
           + VV +  L SGLLLVTGPF  N  PLRR+ Q YVIGTST++ +    L K F+D YF
Sbjct: 105 KRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF 161



 Score = 35.9 bits (79), Expect = 0.023
 Identities = 19/57 (33%), Positives = 34/57 (59%)
 Frame = +2

Query: 101 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRLYLLE 271
           P+++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKR+  L+
Sbjct: 57  PVEKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLK 111



 Score = 33.1 bits (72), Expect = 0.16
 Identities = 19/48 (39%), Positives = 28/48 (58%)
 Frame = +3

Query: 489 KKREIRSSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAASDSVEP 632
           +K+EI   + +K DQK VD A+IKAI A P+ K   G   +    ++P
Sbjct: 183 EKKEI--PQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKP 228


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 32/58 (55%), Positives = 38/58 (65%)
 Frame = +1

Query: 250 QEVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 423
           + VV +  L SGLLLVTGPF  N  PLRR+ Q YVIGTST+I +      K F+D YF
Sbjct: 105 KRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEK-FDDKYF 161



 Score = 38.7 bits (86), Expect = 0.003
 Identities = 21/48 (43%), Positives = 32/48 (66%)
 Frame = +3

Query: 489 KKREIRSSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAASDSVEP 632
           +K+EI   +++K DQKTVD A+IK+I A P+ KV  G   + S  ++P
Sbjct: 183 EKKEI--PQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKP 228



 Score = 33.1 bits (72), Expect = 0.16
 Identities = 18/57 (31%), Positives = 33/57 (57%)
 Frame = +2

Query: 101 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRLYLLE 271
           P+++   FYP ++ ++     R   K  + ++ ++  GTV I+LAGR  GKR+  L+
Sbjct: 57  PVEKPAKFYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKRVVFLK 111


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 101 PLKRRKSFYPTQEKIRASSGGRPFS-KHVRR 190
           P++RR+S  P +E++  S GGR  S  H+++
Sbjct: 525 PVRRRRSLTPDEERVSLSQGGRHTSPSHIKQ 555


>At3g10440.1 68416.m01252 hypothetical protein
          Length = 556

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +1

Query: 526 PIRRQSTRL*SKPSEPDPTRRCSADTSKRLRT 621
           P+RR+S RL S+  EP  +   S +T+KR R+
Sbjct: 311 PLRRRSARLKSQEPEPSESFHDSIETTKRRRS 342


>At1g06660.1 68414.m00706 expressed protein
          Length = 481

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
 Frame = +2

Query: 380 SATSNCQNTSMMITSR---RIRSASN----VQSNAKRVMTSLPQKKRNTFI*AAQNRSED 538
           S TS    +S +I  R   RI SAS+    V+S    +   L +  R TF  A +N+S  
Sbjct: 166 SFTSEQTASSCVIDVRDNARISSASSDGTEVESVGTAIKGELDRTARPTFT-AGKNKSVR 224

Query: 539 SRRGCDQSHRSPTRQEGAPRIPQSG 613
                DQS+ S + + G+ R P+ G
Sbjct: 225 FECDLDQSNSSNSSENGSSRKPEMG 249


>At1g20540.1 68414.m02559 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400);
           similar to Rbap46 polypeptide (GI:9454362) [Gallus
           gallus]
          Length = 351

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +1

Query: 67  WR*EEWGNQNSTPQT*EV--LLPHSGENPCFIWWPS 168
           W+  E   Q ++PQ   V  L  H G+  C +WWPS
Sbjct: 96  WQIPELYGQLNSPQLERVASLDAHVGKINCVLWWPS 131


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,882,848
Number of Sequences: 28952
Number of extensions: 301170
Number of successful extensions: 794
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)