Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30280
(372 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z80223-1|CAB02319.1| 640|Caenorhabditis elegans Hypothetical pr... 156 5e-39
M18540-1|AAA28078.1| 640|Caenorhabditis elegans protein ( C.ele... 155 1e-38
Z81467-1|CAB03871.1| 643|Caenorhabditis elegans Hypothetical pr... 139 5e-34
Z83108-5|CAB05508.1| 645|Caenorhabditis elegans Hypothetical pr... 138 9e-34
Z83108-4|CAB05507.1| 645|Caenorhabditis elegans Hypothetical pr... 138 9e-34
AF000264-1|AAC71123.1| 657|Caenorhabditis elegans Heat shock pr... 118 1e-27
U56965-1|AAB52671.1| 661|Caenorhabditis elegans Heat shock prot... 114 2e-26
M26604-1|AAA28074.1| 661|Caenorhabditis elegans protein ( C. el... 114 2e-26
Z81113-10|CAB54300.1| 607|Caenorhabditis elegans Hypothetical p... 74 4e-14
Z81059-7|CAB54217.1| 607|Caenorhabditis elegans Hypothetical pr... 74 4e-14
U88315-3|AAB42371.1| 657|Caenorhabditis elegans Heat shock prot... 67 4e-12
X07678-1|CAA30525.1| 487|Caenorhabditis elegans hsp6F protein. 64 4e-11
Z49967-2|CAA90248.2| 450|Caenorhabditis elegans Hypothetical pr... 61 2e-10
U28940-6|AAA68352.1| 925|Caenorhabditis elegans Hypothetical pr... 57 5e-09
Z67884-4|CAH60753.1| 905|Caenorhabditis elegans Hypothetical pr... 52 1e-07
Z67884-3|CAA91809.2| 921|Caenorhabditis elegans Hypothetical pr... 52 1e-07
L09634-1|AAA27967.1| 776|Caenorhabditis elegans Hypothetical pr... 44 3e-05
M28528-1|AAA28076.1| 288|Caenorhabditis elegans protein ( C.ele... 29 1.1
L08403-5|AAT92077.1| 531|Caenorhabditis elegans Hypothetical pr... 28 2.4
L08403-4|AAA28021.1| 529|Caenorhabditis elegans Hypothetical pr... 28 2.4
U61949-2|AAB03152.1| 884|Caenorhabditis elegans Puromycin-sensi... 27 3.2
U61949-1|AAY44009.1| 948|Caenorhabditis elegans Puromycin-sensi... 27 3.2
Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical pr... 27 5.7
AF016424-7|AAB65329.3| 520|Caenorhabditis elegans Hypothetical ... 26 7.5
U12964-7|AAA91218.2| 356|Caenorhabditis elegans Rhomboid (droso... 26 9.9
AY305846-1|AAR11990.1| 404|Caenorhabditis elegans nuclear recep... 26 9.9
AF016438-11|AAK84530.2| 404|Caenorhabditis elegans Nuclear horm... 26 9.9
AF003140-7|AAB54170.2| 333|Caenorhabditis elegans Hypothetical ... 26 9.9
>Z80223-1|CAB02319.1| 640|Caenorhabditis elegans Hypothetical
protein F26D10.3 protein.
Length = 640
Score = 156 bits (378), Expect = 5e-39
Identities = 75/85 (88%), Positives = 82/85 (96%)
Frame = +3
Query: 3 TLSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIH 182
TLSSS+QASIEIDSLFEGIDFYT+ITRARFEEL ADLFRSTM+PVEKSLRDAKMDK+Q+H
Sbjct: 274 TLSSSSQASIEIDSLFEGIDFYTNITRARFEELCADLFRSTMDPVEKSLRDAKMDKSQVH 333
Query: 183 DIVLVGGSTRIPKVQKLLQDFFNGR 257
DIVLVGGSTRIPKVQKLL D F+G+
Sbjct: 334 DIVLVGGSTRIPKVQKLLSDLFSGK 358
Score = 50.4 bits (115), Expect = 4e-07
Identities = 26/39 (66%), Positives = 26/39 (66%)
Frame = +2
Query: 254 KELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDLLLLD 370
KELNKSINPDE IL GDKSE VQDLLLLD
Sbjct: 358 KELNKSINPDEAVAYGAAVQAAILSGDKSEAVQDLLLLD 396
>M18540-1|AAA28078.1| 640|Caenorhabditis elegans protein (
C.elegans heat shockprotein 70A gene, complete cds. ).
Length = 640
Score = 155 bits (376), Expect = 1e-38
Identities = 75/85 (88%), Positives = 81/85 (95%)
Frame = +3
Query: 3 TLSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIH 182
TLSSS QASIEIDSLFEGIDFYT+ITRARFEEL ADLFRSTM+PVEKSLRDAKMDK+Q+H
Sbjct: 274 TLSSSCQASIEIDSLFEGIDFYTNITRARFEELCADLFRSTMDPVEKSLRDAKMDKSQVH 333
Query: 183 DIVLVGGSTRIPKVQKLLQDFFNGR 257
DIVLVGGSTRIPKVQKLL D F+G+
Sbjct: 334 DIVLVGGSTRIPKVQKLLSDLFSGK 358
Score = 50.4 bits (115), Expect = 4e-07
Identities = 26/39 (66%), Positives = 26/39 (66%)
Frame = +2
Query: 254 KELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDLLLLD 370
KELNKSINPDE IL GDKSE VQDLLLLD
Sbjct: 358 KELNKSINPDEALAYGAAVQAAILSGDKSEAVQDLLLLD 396
>Z81467-1|CAB03871.1| 643|Caenorhabditis elegans Hypothetical
protein C12C8.1 protein.
Length = 643
Score = 139 bits (337), Expect = 5e-34
Identities = 63/85 (74%), Positives = 78/85 (91%)
Frame = +3
Query: 3 TLSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIH 182
TLSSST+A++E+DSLF+G DFY+ ITRARFEEL ADLFR T+EPVEK+LRDAK DK +I
Sbjct: 274 TLSSSTEATVEVDSLFDGTDFYSKITRARFEELCADLFRKTLEPVEKALRDAKTDKGRID 333
Query: 183 DIVLVGGSTRIPKVQKLLQDFFNGR 257
++VLVGGSTRIPK+QKLL++FFNG+
Sbjct: 334 EVVLVGGSTRIPKIQKLLKEFFNGK 358
Score = 34.7 bits (76), Expect = 0.021
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 254 KELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDLLLLD 370
K+LN SINPDE +L G K + ++D+LL+D
Sbjct: 358 KDLNCSINPDEAVAFGAAVQAAVLSGVKDDTIKDVLLVD 396
>Z83108-5|CAB05508.1| 645|Caenorhabditis elegans Hypothetical
protein F44E5.5 protein.
Length = 645
Score = 138 bits (335), Expect = 9e-34
Identities = 63/85 (74%), Positives = 78/85 (91%)
Frame = +3
Query: 3 TLSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIH 182
TLSSS++A +E+DSLFEGID T ITRARFEEL ADLFR T+EPVEK+LRDAK+DK++I
Sbjct: 274 TLSSSSEACVEVDSLFEGIDLCTKITRARFEELCADLFRKTLEPVEKALRDAKLDKSKID 333
Query: 183 DIVLVGGSTRIPKVQKLLQDFFNGR 257
++VLVGGSTR+PK+QKLL+DFFNG+
Sbjct: 334 EVVLVGGSTRVPKIQKLLKDFFNGK 358
Score = 37.1 bits (82), Expect = 0.004
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = +2
Query: 254 KELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDLLLLD 370
KELN SINPDE +L G K E ++D+LL+D
Sbjct: 358 KELNCSINPDEAVAFGAAVQAAVLSGVKDETIKDVLLVD 396
>Z83108-4|CAB05507.1| 645|Caenorhabditis elegans Hypothetical
protein F44E5.4 protein.
Length = 645
Score = 138 bits (335), Expect = 9e-34
Identities = 63/85 (74%), Positives = 78/85 (91%)
Frame = +3
Query: 3 TLSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIH 182
TLSSS++A +E+DSLFEGID T ITRARFEEL ADLFR T+EPVEK+LRDAK+DK++I
Sbjct: 274 TLSSSSEACVEVDSLFEGIDLCTKITRARFEELCADLFRKTLEPVEKALRDAKLDKSKID 333
Query: 183 DIVLVGGSTRIPKVQKLLQDFFNGR 257
++VLVGGSTR+PK+QKLL+DFFNG+
Sbjct: 334 EVVLVGGSTRVPKIQKLLKDFFNGK 358
Score = 37.1 bits (82), Expect = 0.004
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = +2
Query: 254 KELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDLLLLD 370
KELN SINPDE +L G K E ++D+LL+D
Sbjct: 358 KELNCSINPDEAVAFGAAVQAAVLSGVKDETIKDVLLVD 396
>AF000264-1|AAC71123.1| 657|Caenorhabditis elegans Heat shock
protein protein 4 protein.
Length = 657
Score = 118 bits (284), Expect = 1e-27
Identities = 53/84 (63%), Positives = 70/84 (83%)
Frame = +3
Query: 6 LSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHD 185
LS+ Q IEI+SLF+G DF ++TRA+FEELN DLFR+T++PV+K L DA M K +H+
Sbjct: 301 LSTQHQTKIEIESLFDGEDFSETLTRAKFEELNMDLFRATLKPVQKVLEDADMKKTDVHE 360
Query: 186 IVLVGGSTRIPKVQKLLQDFFNGR 257
IVLVGGSTRIPKVQ+L++D+FNG+
Sbjct: 361 IVLVGGSTRIPKVQQLIKDYFNGK 384
>U56965-1|AAB52671.1| 661|Caenorhabditis elegans Heat shock protein
protein 3 protein.
Length = 661
Score = 114 bits (274), Expect = 2e-26
Identities = 50/84 (59%), Positives = 70/84 (83%)
Frame = +3
Query: 6 LSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHD 185
LS+ Q +EI+SLF+G DF ++TRA+FEELN DLFR+T++PV+K L D+ + K +H+
Sbjct: 304 LSTQHQTKVEIESLFDGEDFSETLTRAKFEELNMDLFRATLKPVQKVLEDSDLKKDDVHE 363
Query: 186 IVLVGGSTRIPKVQKLLQDFFNGR 257
IVLVGGSTRIPKVQ+L+++FFNG+
Sbjct: 364 IVLVGGSTRIPKVQQLIKEFFNGK 387
>M26604-1|AAA28074.1| 661|Caenorhabditis elegans protein ( C.
elegans BiP (hsp3)gene, complete cds. ).
Length = 661
Score = 114 bits (274), Expect = 2e-26
Identities = 50/84 (59%), Positives = 70/84 (83%)
Frame = +3
Query: 6 LSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHD 185
LS+ Q +EI+SLF+G DF ++TRA+FEELN DLFR+T++PV+K L D+ + K +H+
Sbjct: 304 LSTQHQTKVEIESLFDGEDFSETLTRAKFEELNMDLFRATLKPVQKVLEDSDLKKDDVHE 363
Query: 186 IVLVGGSTRIPKVQKLLQDFFNGR 257
IVLVGGSTRIPKVQ+L+++FFNG+
Sbjct: 364 IVLVGGSTRIPKVQQLIKEFFNGK 387
>Z81113-10|CAB54300.1| 607|Caenorhabditis elegans Hypothetical
protein F11F1.1 protein.
Length = 607
Score = 73.7 bits (173), Expect = 4e-14
Identities = 37/86 (43%), Positives = 58/86 (67%)
Frame = +3
Query: 3 TLSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIH 182
TLS+S+ A IE++ L GIDF I+R FE +L +T+ VE+ +R+A + K+QI+
Sbjct: 270 TLSASSVARIELECLHLGIDFIMRISRTDFESWIENLLMATVIHVERVIREANLKKSQIN 329
Query: 183 DIVLVGGSTRIPKVQKLLQDFFNGRS 260
+IVLVGGSTRIP ++ +++ F +
Sbjct: 330 EIVLVGGSTRIPILKNIIKQSFESNT 355
>Z81059-7|CAB54217.1| 607|Caenorhabditis elegans Hypothetical
protein F11F1.1 protein.
Length = 607
Score = 73.7 bits (173), Expect = 4e-14
Identities = 37/86 (43%), Positives = 58/86 (67%)
Frame = +3
Query: 3 TLSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIH 182
TLS+S+ A IE++ L GIDF I+R FE +L +T+ VE+ +R+A + K+QI+
Sbjct: 270 TLSASSVARIELECLHLGIDFIMRISRTDFESWIENLLMATVIHVERVIREANLKKSQIN 329
Query: 183 DIVLVGGSTRIPKVQKLLQDFFNGRS 260
+IVLVGGSTRIP ++ +++ F +
Sbjct: 330 EIVLVGGSTRIPILKNIIKQSFESNT 355
>U88315-3|AAB42371.1| 657|Caenorhabditis elegans Heat shock protein
protein 6 protein.
Length = 657
Score = 66.9 bits (156), Expect = 4e-12
Identities = 28/58 (48%), Positives = 44/58 (75%)
Frame = +3
Query: 75 ITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF 248
+TRA+FE++ DL + T+EP K+L DA++ +QI D++LVGG +R+PKVQ +Q+ F
Sbjct: 325 LTRAKFEQIVGDLIKRTIEPCRKALHDAEVKSSQIADVLLVGGMSRMPKVQATVQEIF 382
>X07678-1|CAA30525.1| 487|Caenorhabditis elegans hsp6F protein.
Length = 487
Score = 63.7 bits (148), Expect = 4e-11
Identities = 27/58 (46%), Positives = 42/58 (72%)
Frame = +3
Query: 75 ITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF 248
+TRA+FE++ DL + T+EP L DA++ +QI D++LVGG +R+PKVQ +Q+ F
Sbjct: 325 LTRAKFEQIVGDLIKRTIEPCRNVLHDAEVKSSQIADVLLVGGMSRMPKVQATVQEIF 382
>Z49967-2|CAA90248.2| 450|Caenorhabditis elegans Hypothetical
protein F54C9.2 protein.
Length = 450
Score = 61.3 bits (142), Expect = 2e-10
Identities = 27/58 (46%), Positives = 40/58 (68%)
Frame = +3
Query: 75 ITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF 248
+TR FE LN DL ++ P+ +L DA +D A + +IVLVGGST++P V+K++ FF
Sbjct: 329 LTRDEFETLNGDLLKAIELPITAALADANLDTADVDEIVLVGGSTQVPAVRKIVGRFF 386
>U28940-6|AAA68352.1| 925|Caenorhabditis elegans Hypothetical
protein T24H7.2 protein.
Length = 925
Score = 56.8 bits (131), Expect = 5e-09
Identities = 29/78 (37%), Positives = 47/78 (60%)
Frame = +3
Query: 6 LSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHD 185
LS++ + +I+S E ID +TR F L +D+ EP+E++LR A++ I
Sbjct: 309 LSANAEHFAQIESAHEDIDAKLKVTREDFNHLISDMESRFGEPIEQALRMAQIPIDDIDQ 368
Query: 186 IVLVGGSTRIPKVQKLLQ 239
VL+G TR+PKVQ+++Q
Sbjct: 369 FVLMGAGTRVPKVQEIVQ 386
>Z67884-4|CAH60753.1| 905|Caenorhabditis elegans Hypothetical
protein T14G8.3b protein.
Length = 905
Score = 52.4 bits (120), Expect = 1e-07
Identities = 26/90 (28%), Positives = 49/90 (54%)
Frame = +3
Query: 6 LSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHD 185
LS++ +++SLFE +F +TR E++ DL P+ ++ A++ I
Sbjct: 296 LSANKDTYAQVESLFEEQNFRAKVTREELEKMIEDLEPRIAAPILDAIGMAQISTNDIDL 355
Query: 186 IVLVGGSTRIPKVQKLLQDFFNGRSSTNLL 275
+VL+G TR+PKV+++L+ + +N L
Sbjct: 356 VVLMGAGTRVPKVKEILKTILKDKEISNFL 385
>Z67884-3|CAA91809.2| 921|Caenorhabditis elegans Hypothetical
protein T14G8.3a protein.
Length = 921
Score = 52.4 bits (120), Expect = 1e-07
Identities = 26/90 (28%), Positives = 49/90 (54%)
Frame = +3
Query: 6 LSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHD 185
LS++ +++SLFE +F +TR E++ DL P+ ++ A++ I
Sbjct: 312 LSANKDTYAQVESLFEEQNFRAKVTREELEKMIEDLEPRIAAPILDAIGMAQISTNDIDL 371
Query: 186 IVLVGGSTRIPKVQKLLQDFFNGRSSTNLL 275
+VL+G TR+PKV+++L+ + +N L
Sbjct: 372 VVLMGAGTRVPKVKEILKTILKDKEISNFL 401
>L09634-1|AAA27967.1| 776|Caenorhabditis elegans Hypothetical
protein C30C11.4 protein.
Length = 776
Score = 44.4 bits (100), Expect = 3e-05
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = +3
Query: 9 SSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQ-IHD 185
++ T + I+ E D + R FE+L A +F + + D K + I +
Sbjct: 281 ANQTPIPLNIECFMEDKDVTGKMQRQEFEDLAAPIFNRIKQVLINLFADGVSIKPEEIDE 340
Query: 186 IVLVGGSTRIPKVQKLLQDFFNGRSSTNL 272
I +VGGS+RIP ++++++D F T +
Sbjct: 341 IEIVGGSSRIPMIREIVKDLFGKEPKTTM 369
>M28528-1|AAA28076.1| 288|Caenorhabditis elegans protein (
C.elegans heat shockprotein 4 gene, 3' end. ).
Length = 288
Score = 29.1 bits (62), Expect = 1.1
Identities = 10/15 (66%), Positives = 15/15 (100%)
Frame = +3
Query: 213 IPKVQKLLQDFFNGR 257
IPKVQ+L++D+FNG+
Sbjct: 1 IPKVQQLIKDYFNGK 15
>L08403-5|AAT92077.1| 531|Caenorhabditis elegans Hypothetical
protein F42H10.7b protein.
Length = 531
Score = 27.9 bits (59), Expect = 2.4
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = -1
Query: 207 WSHPPVQYRGFEPYPSWHHGETSPLAPW 124
WS P R P +W G T+P + W
Sbjct: 463 WSRPSSSKRSTTPGSAWSRGSTTPGSSW 490
>L08403-4|AAA28021.1| 529|Caenorhabditis elegans Hypothetical
protein F42H10.7a protein.
Length = 529
Score = 27.9 bits (59), Expect = 2.4
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = -1
Query: 207 WSHPPVQYRGFEPYPSWHHGETSPLAPW 124
WS P R P +W G T+P + W
Sbjct: 461 WSRPSSSKRSTTPGSAWSRGSTTPGSSW 488
>U61949-2|AAB03152.1| 884|Caenorhabditis elegans
Puromycin-sensitive aminopeptidaseprotein 1, isoform a
protein.
Length = 884
Score = 27.5 bits (58), Expect = 3.2
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 6 LSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPV-EKSLR 152
L +S +EID+ E + Y SIT A+ +N L EPV +K LR
Sbjct: 374 LRNSHPIEVEIDNPNELDEIYDSITYAKSNSVNRMLCYYLSEPVFQKGLR 423
>U61949-1|AAY44009.1| 948|Caenorhabditis elegans
Puromycin-sensitive aminopeptidaseprotein 1, isoform b
protein.
Length = 948
Score = 27.5 bits (58), Expect = 3.2
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 6 LSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPV-EKSLR 152
L +S +EID+ E + Y SIT A+ +N L EPV +K LR
Sbjct: 438 LRNSHPIEVEIDNPNELDEIYDSITYAKSNSVNRMLCYYLSEPVFQKGLR 487
>Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical
protein T16G12.1 protein.
Length = 1890
Score = 26.6 bits (56), Expect = 5.7
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Frame = -1
Query: 228 SAPWGYEWSHP--PVQYRGFEPYPSW 157
+ PW Y WS P R +PY W
Sbjct: 577 ATPWNYTWSIPLTSANLRHADPYKQW 602
>AF016424-7|AAB65329.3| 520|Caenorhabditis elegans Hypothetical
protein F39G3.3 protein.
Length = 520
Score = 26.2 bits (55), Expect = 7.5
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -1
Query: 228 SAPWGYEWSHPPVQYRGFEPYPSWHHGETSPLAP 127
S P G + P Q R F P P+W H E + P
Sbjct: 232 SPPPGMQQQSPERQ-RAFSPTPAWRHQENVVVDP 264
>U12964-7|AAA91218.2| 356|Caenorhabditis elegans Rhomboid
(drosophila) related protein1 protein.
Length = 356
Score = 25.8 bits (54), Expect = 9.9
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +1
Query: 286 GRSLWCSCPGCYL 324
GRS+W C GC++
Sbjct: 134 GRSIWTDCAGCFV 146
>AY305846-1|AAR11990.1| 404|Caenorhabditis elegans nuclear receptor
NHR-126 protein.
Length = 404
Score = 25.8 bits (54), Expect = 9.9
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = -2
Query: 245 EILQELLHLGDTSGATHQYNIVDLSLIHLGITERLLHWLHGRPEQIGVQLLEASTSN 75
E+LQ + L D SG Y ++ LSL H G + G+ ++ LLEA N
Sbjct: 294 EVLQYIKDL-DPSGIEVSYMLLQLSLYHAGSKGQ------GKVMEVAEMLLEAQADN 343
>AF016438-11|AAK84530.2| 404|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 126 protein.
Length = 404
Score = 25.8 bits (54), Expect = 9.9
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = -2
Query: 245 EILQELLHLGDTSGATHQYNIVDLSLIHLGITERLLHWLHGRPEQIGVQLLEASTSN 75
E+LQ + L D SG Y ++ LSL H G + G+ ++ LLEA N
Sbjct: 294 EVLQYIKDL-DPSGIEVSYMLLQLSLYHAGSKGQ------GKVMEVAEMLLEAQADN 343
>AF003140-7|AAB54170.2| 333|Caenorhabditis elegans Hypothetical
protein C44E4.2 protein.
Length = 333
Score = 25.8 bits (54), Expect = 9.9
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 9 SSSTQASIEIDSLFEGIDFYTSITRARFEEL-NADLFRSTMEPVEKSLRDAKMDKA 173
+SST+ S +I S+ +G +TR F + N DL + + + + K+D +
Sbjct: 115 ASSTKCSEQITSICKGFALEFGLTRRLFSAIWNTDLEETARKMMNQEWDSVKIDSS 170
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,735,673
Number of Sequences: 27780
Number of extensions: 172594
Number of successful extensions: 514
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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