Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30277
         (424 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   3.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    20   10.0 

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +2

Query: 5   LSLASDGKKCVPRIPLAIAEPLPLVRASSRCYAPCDTVTWLTRKVRQLND 154
           LSL S+       +    AEP P+ +A S+C+    T   + RK     D
Sbjct: 682 LSLGSEALSAAT-VRFIEAEPQPIGKALSKCHNRNVTTCNMFRKTNLSGD 730


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +2

Query: 230 NYAYRVLDERLRWKAGI 280
           ++ Y + D R +W AG+
Sbjct: 158 SFGYTMRDIRYKWNAGL 174


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 230 NYAYRVLDERLRWKAGIVDASED 298
           +Y Y VLD  + WK   V   E+
Sbjct: 181 SYGYTVLDVVMYWKETPVRGVEE 203


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,335
Number of Sequences: 438
Number of extensions: 2159
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)