Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30274
(454 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P12004 Cluster: Proliferating cell nuclear antigen; n=8... 107 1e-22
UniRef50_Q9ZW35 Cluster: Proliferating cell nuclear antigen 2; n... 106 3e-22
UniRef50_Q5K7Y2 Cluster: Proliferating cell nuclear antigen; n=1... 87 2e-16
UniRef50_Q9VIT0 Cluster: CG10262-PA; n=3; Sophophora|Rep: CG1026... 79 3e-14
UniRef50_A5Z0S2 Cluster: Proliferating cell nuclear antigen 2; n... 79 4e-14
UniRef50_A6RIU4 Cluster: Proliferating cell nuclear antigen; n=2... 77 2e-13
UniRef50_P11038 Cluster: Probable DNA polymerase sliding clamp; ... 76 3e-13
UniRef50_Q8X1W1 Cluster: Proliferating cell nuclear antigen; n=1... 75 7e-13
UniRef50_O02115 Cluster: Proliferating cell nuclear antigen; n=6... 71 1e-11
UniRef50_P61074 Cluster: Proliferating cell nuclear antigen; n=8... 69 5e-11
UniRef50_A2DQV2 Cluster: Proliferating cell nuclear antigen, put... 68 8e-11
UniRef50_A0BN24 Cluster: Proliferating cell nuclear antigen; n=4... 66 3e-10
UniRef50_Q4P3B0 Cluster: Proliferating cell nuclear antigen; n=1... 66 4e-10
UniRef50_Q4QF35 Cluster: Proliferating cell nuclear antigen; n=6... 65 6e-10
UniRef50_P15873 Cluster: Proliferating cell nuclear antigen; n=1... 64 1e-09
UniRef50_Q5CW01 Cluster: Proliferating cell nuclear antigen PCNA... 64 1e-09
UniRef50_Q8GZE5 Cluster: Proliferating cell nuclear antigen; n=1... 63 2e-09
UniRef50_Q9NGR7 Cluster: Proliferating cell nuclear antigen 1; n... 61 9e-09
UniRef50_A7AVH8 Cluster: Proliferating cell nuclear antigen 1; n... 59 4e-08
UniRef50_Q98SC0 Cluster: Proliferating cell nuclear antigen; n=1... 57 2e-07
UniRef50_Q5CJE0 Cluster: Proliferating cell nuclear antigen; n=2... 54 1e-06
UniRef50_Q8WSN0 Cluster: Proliferating cell nuclear antigen 2; n... 48 9e-05
UniRef50_A2F7D4 Cluster: Proliferating cell nuclear antigen, put... 46 3e-04
UniRef50_UPI000049949B Cluster: proliferating cell nuclear antig... 45 7e-04
UniRef50_A7AUH5 Cluster: Proliferating cell nuclear antigen; n=3... 45 9e-04
UniRef50_A0RXH7 Cluster: DNA polymerase sliding clamp subunit; n... 44 0.001
UniRef50_Q84513 Cluster: Probable DNA polymerase sliding clamp 1... 44 0.001
UniRef50_Q7QSA2 Cluster: Proliferating cell nuclear antigen; n=1... 43 0.004
UniRef50_Q4A3A5 Cluster: Putative proliferating cell nuclear ant... 41 0.011
UniRef50_A7KA48 Cluster: Putative uncharacterized protein Z788R;... 41 0.014
UniRef50_O10308 Cluster: Probable DNA polymerase sliding clamp; ... 39 0.058
UniRef50_Q64803 Cluster: 20.6 kDa protein; n=1; Autographa calif... 36 0.31
UniRef50_Q4KT14 Cluster: PCNA; n=2; Nucleopolyhedrovirus|Rep: PC... 36 0.41
UniRef50_Q016T8 Cluster: Chromosome 06 contig 1, DNA sequence; n... 36 0.54
UniRef50_A3HAI1 Cluster: DNA polymerase sliding clamp; n=1; Cald... 35 0.71
UniRef50_A2BN98 Cluster: DNA polymerase sliding clamp B2; n=1; H... 35 0.94
UniRef50_Q8SRV9 Cluster: Proliferating cell nuclear antigen; n=1... 34 1.6
UniRef50_Q9NGR6 Cluster: Proliferating cell nuclear antigen 2; n... 33 2.2
UniRef50_O73947 Cluster: DNA polymerase sliding clamp; n=7; Ther... 33 2.2
UniRef50_O27367 Cluster: DNA polymerase sliding clamp; n=3; Meth... 33 2.9
UniRef50_Q4UH03 Cluster: Putative uncharacterized protein; n=3; ... 33 3.8
UniRef50_O41056 Cluster: Probable DNA polymerase sliding clamp 2... 33 3.8
UniRef50_Q9NA32 Cluster: Putative uncharacterized protein; n=3; ... 32 5.0
UniRef50_Q6LWJ8 Cluster: DNA polymerase sliding clamp; n=8; cell... 32 5.0
UniRef50_UPI0000E80376 Cluster: PREDICTED: hypothetical protein;... 31 8.7
UniRef50_Q3LWE0 Cluster: Proliferating cell nuclear antigen; n=1... 31 8.7
UniRef50_Q4JAI6 Cluster: DNA polymerase sliding clamp 1; n=6; Su... 31 8.7
>UniRef50_P12004 Cluster: Proliferating cell nuclear antigen; n=83;
Eukaryota|Rep: Proliferating cell nuclear antigen - Homo
sapiens (Human)
Length = 261
Score = 107 bits (257), Expect = 1e-22
Identities = 46/66 (69%), Positives = 59/66 (89%)
Frame = +1
Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFE 435
VSLV LTLR++GFD YRCDRN++MG+NL SMSKILKCAG++D +T++A+DNAD + VFE
Sbjct: 45 VSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFE 104
Query: 436 SPNQEK 453
+PNQEK
Sbjct: 105 APNQEK 110
Score = 57.2 bits (132), Expect = 2e-07
Identities = 25/42 (59%), Positives = 35/42 (83%)
Frame = +2
Query: 125 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDN 250
MFEARL++ SILKKVLEA+KDL+ +A +D +G+ LQ+MD+
Sbjct: 1 MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDS 42
>UniRef50_Q9ZW35 Cluster: Proliferating cell nuclear antigen 2;
n=60; Eukaryota|Rep: Proliferating cell nuclear antigen
2 - Arabidopsis thaliana (Mouse-ear cress)
Length = 264
Score = 106 bits (254), Expect = 3e-22
Identities = 46/66 (69%), Positives = 58/66 (87%)
Frame = +1
Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFE 435
V+LVSL LR++GF+ YRCDRN+SMGMNLG+MSK+LKCAG+ D +TIKA D +D VTF+FE
Sbjct: 45 VALVSLLLRSEGFEHYRCDRNLSMGMNLGNMSKMLKCAGNDDIITIKADDGSDTVTFMFE 104
Query: 436 SPNQEK 453
SP Q+K
Sbjct: 105 SPTQDK 110
Score = 56.8 bits (131), Expect = 2e-07
Identities = 25/42 (59%), Positives = 31/42 (73%)
Frame = +2
Query: 125 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDN 250
M E RL++ S+LKKVLEA+KDL+ A FDC G LQAMD+
Sbjct: 1 MLELRLVQGSLLKKVLEAVKDLVNDANFDCSTTGFSLQAMDS 42
>UniRef50_Q5K7Y2 Cluster: Proliferating cell nuclear antigen; n=1;
Filobasidiella neoformans|Rep: Proliferating cell
nuclear antigen - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 343
Score = 87.0 bits (206), Expect = 2e-16
Identities = 36/66 (54%), Positives = 52/66 (78%)
Frame = +1
Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFE 435
++LV+L L A FD+YRCDRN+ +G+NL S++KILKCA D D VT+KA D+AD + +FE
Sbjct: 45 IALVALKLEASEFDEYRCDRNMPLGVNLASLTKILKCAKDTDVVTLKASDDADALNLIFE 104
Query: 436 SPNQEK 453
SP +++
Sbjct: 105 SPKEDR 110
Score = 52.0 bits (119), Expect = 6e-06
Identities = 22/42 (52%), Positives = 32/42 (76%)
Frame = +2
Query: 125 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDN 250
M EAR+ ++ +LKK+L+AIK+L++ DC + GI LQAMDN
Sbjct: 1 MLEARVKQAVVLKKLLDAIKELVSDGNLDCTEEGISLQAMDN 42
>UniRef50_Q9VIT0 Cluster: CG10262-PA; n=3; Sophophora|Rep:
CG10262-PA - Drosophila melanogaster (Fruit fly)
Length = 255
Score = 79.4 bits (187), Expect = 3e-14
Identities = 34/66 (51%), Positives = 49/66 (74%)
Frame = +1
Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFE 435
VSLV+L+L +D F+K+ CDRN+S+G++L S+ K+LKCA D VTIKA D + +T FE
Sbjct: 45 VSLVALSLASDCFEKFHCDRNVSLGLDLKSLGKVLKCANSDDAVTIKAVDRPEKITLSFE 104
Query: 436 SPNQEK 453
S +E+
Sbjct: 105 SDGKER 110
Score = 56.4 bits (130), Expect = 3e-07
Identities = 21/42 (50%), Positives = 35/42 (83%)
Frame = +2
Query: 125 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDN 250
M EARL ++ +LKK+++A+K+++ Q T DC +NG++LQ+MDN
Sbjct: 1 MLEARLSQTLLLKKIVDALKEIIAQGTLDCSENGLELQSMDN 42
>UniRef50_A5Z0S2 Cluster: Proliferating cell nuclear antigen 2; n=1;
Phaseolus coccineus|Rep: Proliferating cell nuclear
antigen 2 - Phaseolus coccineus (Scarlet runner bean)
Length = 271
Score = 79.0 bits (186), Expect = 4e-14
Identities = 35/67 (52%), Positives = 46/67 (68%)
Frame = +1
Query: 253 SVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVF 432
++S+++L L + GF+ YRCD N SMGMNL SM ++L A D +TIKA D D VTF F
Sbjct: 43 NLSILALVLHSSGFEHYRCDHNFSMGMNLYSMVELLNRANGDDIITIKADDGGDTVTFTF 102
Query: 433 ESPNQEK 453
ESP Q +
Sbjct: 103 ESPRQNQ 109
Score = 40.3 bits (90), Expect = 0.019
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = +2
Query: 125 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDN 250
M E R ++ S+LKKV E IK+ + F C GI +QAM++
Sbjct: 1 MLEVRFVQGSLLKKVSEIIKEFIHDTNFYCSSTGIIVQAMNS 42
>UniRef50_A6RIU4 Cluster: Proliferating cell nuclear antigen; n=2;
Sclerotiniaceae|Rep: Proliferating cell nuclear antigen
- Botryotinia fuckeliana B05.10
Length = 259
Score = 76.6 bits (180), Expect = 2e-13
Identities = 32/66 (48%), Positives = 51/66 (77%)
Frame = +1
Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFE 435
V+LVS+ L+A+GF YRCDRN+++G+NL S++K+L+ A ++D +TIKA+D D + VFE
Sbjct: 45 VALVSMMLKAEGFSPYRCDRNVALGVNLTSLTKVLRAAQNEDILTIKAEDAPDVLNLVFE 104
Query: 436 SPNQEK 453
S ++
Sbjct: 105 SSESDR 110
Score = 58.8 bits (136), Expect = 5e-08
Identities = 26/42 (61%), Positives = 34/42 (80%)
Frame = +2
Query: 125 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDN 250
M EARL ++ +LKKV++AIKDL+ FDC+D+GI LQAMDN
Sbjct: 1 MLEARLEQADLLKKVVDAIKDLVQDCNFDCNDSGIALQAMDN 42
>UniRef50_P11038 Cluster: Probable DNA polymerase sliding clamp;
n=4; Nucleopolyhedrovirus|Rep: Probable DNA polymerase
sliding clamp - Autographa californica nuclear
polyhedrosis virus (AcMNPV)
Length = 256
Score = 76.2 bits (179), Expect = 3e-13
Identities = 31/64 (48%), Positives = 48/64 (75%)
Frame = +1
Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFE 435
V+LVSL L A+GF KYRCDRN+ + +++ S+SKI+KC ++ +V +KA+D D + FVF
Sbjct: 45 VALVSLQLHAEGFKKYRCDRNVPLNVSINSLSKIVKCVNERSSVLMKAEDQGDVMAFVFN 104
Query: 436 SPNQ 447
+ N+
Sbjct: 105 NDNR 108
Score = 52.8 bits (121), Expect = 3e-06
Identities = 21/41 (51%), Positives = 29/41 (70%)
Frame = +2
Query: 125 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMD 247
MFEA ++LK+++E KDLL ATFDCD+ G+ +Q MD
Sbjct: 1 MFEAEFKTGAVLKRLVETFKDLLPHATFDCDNRGVSMQVMD 41
>UniRef50_Q8X1W1 Cluster: Proliferating cell nuclear antigen; n=1;
Coprinopsis cinerea|Rep: Proliferating cell nuclear
antigen - Coprinus cinereus (Inky cap fungus)
(Hormographiella aspergillata)
Length = 368
Score = 74.9 bits (176), Expect = 7e-13
Identities = 30/66 (45%), Positives = 48/66 (72%)
Frame = +1
Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFE 435
V+LV++ + GF +YRCDR + +G+NLGS++K+LKCA D D T+KA D AD + ++E
Sbjct: 45 VALVAVKILVSGFKRYRCDRPMPLGVNLGSLTKVLKCAKDDDICTLKAADEADVLNLIYE 104
Query: 436 SPNQEK 453
+ N ++
Sbjct: 105 AKNSDR 110
Score = 57.2 bits (132), Expect = 2e-07
Identities = 24/42 (57%), Positives = 34/42 (80%)
Frame = +2
Query: 125 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDN 250
M EA+L + +LKK+L+AIK+L+T A F+C++ GI LQAMDN
Sbjct: 1 MLEAKLAEAGLLKKLLDAIKELVTDANFECNEEGINLQAMDN 42
>UniRef50_O02115 Cluster: Proliferating cell nuclear antigen; n=6;
Eukaryota|Rep: Proliferating cell nuclear antigen -
Caenorhabditis elegans
Length = 229
Score = 70.9 bits (166), Expect = 1e-11
Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Frame = +1
Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDN-ADNVTFVF 432
V+LVSL L FD YRCDR I++G++L +MSK LKCA + DT +K ++N D++ F F
Sbjct: 11 VALVSLKLEVGLFDTYRCDRTINLGLSLANMSKALKCANNDDTCMLKYEENEGDSIIFTF 70
Query: 433 ESPNQEK 453
P ++K
Sbjct: 71 ADPKRDK 77
>UniRef50_P61074 Cluster: Proliferating cell nuclear antigen; n=8;
Aconoidasida|Rep: Proliferating cell nuclear antigen -
Plasmodium falciparum (isolate 3D7)
Length = 274
Score = 68.9 bits (161), Expect = 5e-11
Identities = 30/66 (45%), Positives = 45/66 (68%)
Frame = +1
Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFE 435
VSLVSL L GF YRCDR +G+N+ S++K+ K G ++V I ++D+ DN+ FVFE
Sbjct: 45 VSLVSLHLLDSGFSHYRCDRERVLGVNIASLNKVFKLCGANESVVISSKDDEDNLNFVFE 104
Query: 436 SPNQEK 453
+ ++K
Sbjct: 105 NNKEDK 110
Score = 50.0 bits (114), Expect = 2e-05
Identities = 22/41 (53%), Positives = 31/41 (75%)
Frame = +2
Query: 125 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMD 247
M EA+L +SILKK+ E IKDL+ A D D++G++LQA+D
Sbjct: 1 MLEAKLNNASILKKLFECIKDLVNDANVDADESGLKLQALD 41
>UniRef50_A2DQV2 Cluster: Proliferating cell nuclear antigen,
putative; n=1; Trichomonas vaginalis G3|Rep:
Proliferating cell nuclear antigen, putative -
Trichomonas vaginalis G3
Length = 263
Score = 68.1 bits (159), Expect = 8e-11
Identities = 27/66 (40%), Positives = 47/66 (71%)
Frame = +1
Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFE 435
V+LVS+ L A+GF+KY C +N S+G+NLG++ KILKC + D +T++ ++ + F FE
Sbjct: 45 VALVSMNLNANGFEKYNCAQNTSLGVNLGAIQKILKCGDNNDVLTLETNEDQSCLKFKFE 104
Query: 436 SPNQEK 453
+ + ++
Sbjct: 105 NSSSDR 110
Score = 46.4 bits (105), Expect = 3e-04
Identities = 19/41 (46%), Positives = 28/41 (68%)
Frame = +2
Query: 125 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMD 247
M E RL LKK+L+A++DL+ +A +C + G+ LQAMD
Sbjct: 1 MVECRLTNPGNLKKILDALRDLVEEANIECSETGLSLQAMD 41
>UniRef50_A0BN24 Cluster: Proliferating cell nuclear antigen; n=4;
Paramecium tetraurelia|Rep: Proliferating cell nuclear
antigen - Paramecium tetraurelia
Length = 259
Score = 66.5 bits (155), Expect = 3e-10
Identities = 27/65 (41%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Frame = +1
Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQ-DNADNVTFVF 432
V+LV+L L GF KYRC+++++MG+++ ++ KILKC+G+ D +T++ Q + ++F F
Sbjct: 45 VALVALQLNEKGFKKYRCEKSLTMGLSIENLQKILKCSGNDDQITLRTQEEEPTTLSFTF 104
Query: 433 ESPNQ 447
ES N+
Sbjct: 105 ESKNR 109
Score = 40.7 bits (91), Expect = 0.014
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = +2
Query: 125 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMD 247
MFEA+ + KK++EAIK+L+ + + GI LQAMD
Sbjct: 1 MFEAKFEDGVLFKKIVEAIKELVKNVNLEANGTGISLQAMD 41
>UniRef50_Q4P3B0 Cluster: Proliferating cell nuclear antigen; n=1;
Ustilago maydis|Rep: Proliferating cell nuclear antigen
- Ustilago maydis (Smut fungus)
Length = 289
Score = 65.7 bits (153), Expect = 4e-10
Identities = 27/66 (40%), Positives = 45/66 (68%)
Frame = +1
Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFE 435
V+L ++ LR D F+++RCDR +S+G++L S+ KILK A + D + +K D+ D + FE
Sbjct: 45 VALSAIELRTDCFEEFRCDRPMSIGVSLSSLGKILKSANNDDVLALKKSDDGDTLQMTFE 104
Query: 436 SPNQEK 453
SP ++
Sbjct: 105 SPKSDR 110
Score = 57.2 bits (132), Expect = 2e-07
Identities = 24/42 (57%), Positives = 35/42 (83%)
Frame = +2
Query: 125 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDN 250
M EARL + +LKKVL+A+++L+T A F+C ++GI+LQAMDN
Sbjct: 1 MLEARLPEAVLLKKVLDAVRELITDANFECSEDGIRLQAMDN 42
>UniRef50_Q4QF35 Cluster: Proliferating cell nuclear antigen; n=6;
Trypanosomatidae|Rep: Proliferating cell nuclear antigen
- Leishmania major
Length = 293
Score = 65.3 bits (152), Expect = 6e-10
Identities = 29/75 (38%), Positives = 48/75 (64%)
Frame = +1
Query: 229 SVTGYGQLSVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDN 408
S+ V+LV + LR D F KY+C+RNI +G+NL S+SK+LK D+++++ D+
Sbjct: 36 SIQAMDSSHVALVHMLLRDDCFVKYQCERNIILGLNLASLSKVLKIVDGNDSLSLRHDDD 95
Query: 409 ADNVTFVFESPNQEK 453
+D VT E+P + +
Sbjct: 96 SDVVTLTSENPEKTR 110
Score = 43.2 bits (97), Expect = 0.003
Identities = 17/42 (40%), Positives = 30/42 (71%)
Frame = +2
Query: 125 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDN 250
M EA++ +S+ K+++E I L+ +A FDC+ G+ +QAMD+
Sbjct: 1 MLEAQVQYASLWKRLVECINGLVNEANFDCNPGGLSIQAMDS 42
>UniRef50_P15873 Cluster: Proliferating cell nuclear antigen; n=11;
Saccharomycetales|Rep: Proliferating cell nuclear
antigen - Saccharomyces cerevisiae (Baker's yeast)
Length = 258
Score = 64.5 bits (150), Expect = 1e-09
Identities = 26/66 (39%), Positives = 45/66 (68%)
Frame = +1
Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFE 435
V LVSL + + F +YRCD +++GM+L S+SKIL+C + DT+T+ A + D++ +FE
Sbjct: 45 VLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNTPDSIILLFE 104
Query: 436 SPNQEK 453
+++
Sbjct: 105 DTKKDR 110
>UniRef50_Q5CW01 Cluster: Proliferating cell nuclear antigen PCNA;
n=2; Cryptosporidium|Rep: Proliferating cell nuclear
antigen PCNA - Cryptosporidium parvum Iowa II
Length = 262
Score = 64.1 bits (149), Expect = 1e-09
Identities = 25/66 (37%), Positives = 47/66 (71%)
Frame = +1
Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFE 435
VSLV L L+ F++YRCD+N ++G+N ++ K+LK + D V ++ D+++++ F+FE
Sbjct: 45 VSLVGLYLKDTAFERYRCDKNRTLGLNTQNVVKLLKLCSNDDQVLLRHDDDSESLIFIFE 104
Query: 436 SPNQEK 453
+PN ++
Sbjct: 105 TPNGDR 110
Score = 50.8 bits (116), Expect = 1e-05
Identities = 21/42 (50%), Positives = 31/42 (73%)
Frame = +2
Query: 125 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDN 250
MFEARL IL+KV EAI +L++ +C+++G+ +QAMDN
Sbjct: 1 MFEARLSNGGILRKVFEAITNLVSDVNLECNESGVTIQAMDN 42
>UniRef50_Q8GZE5 Cluster: Proliferating cell nuclear antigen; n=16;
Dinophyceae|Rep: Proliferating cell nuclear antigen -
Pyrocystis lunula (Dinoflagellate)
Length = 259
Score = 63.3 bits (147), Expect = 2e-09
Identities = 29/66 (43%), Positives = 46/66 (69%)
Frame = +1
Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFE 435
V+LVSL LR F ++RCDR S+GMN+ S++KILK G D++ ++ + +AD V+F E
Sbjct: 46 VALVSLLLRESAFAEFRCDRPTSLGMNVDSLAKILKMCGTSDSLKLRWRGDADMVSFQCE 105
Query: 436 SPNQEK 453
S +++
Sbjct: 106 SGEEDR 111
Score = 48.4 bits (110), Expect = 7e-05
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = +2
Query: 131 EARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDN 250
EA L ++ +LKKV++AIKDL FDC + G+Q+Q+MD+
Sbjct: 4 EAHLQQAVLLKKVVDAIKDLCKDVNFDCSEKGLQVQSMDS 43
>UniRef50_Q9NGR7 Cluster: Proliferating cell nuclear antigen 1; n=1;
Toxoplasma gondii|Rep: Proliferating cell nuclear
antigen 1 - Toxoplasma gondii
Length = 316
Score = 61.3 bits (142), Expect = 9e-09
Identities = 28/66 (42%), Positives = 44/66 (66%)
Frame = +1
Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFE 435
V+LV+L L GF +RCDR +G+NL S+ K+ K + D+ +I+ ++++D VTFVFE
Sbjct: 45 VALVALKLDDAGFVHFRCDRERLLGLNLASVCKVFKLCSNADSCSIQNEEDSDTVTFVFE 104
Query: 436 SPNQEK 453
+ EK
Sbjct: 105 NEADEK 110
Score = 51.2 bits (117), Expect = 1e-05
Identities = 19/42 (45%), Positives = 33/42 (78%)
Frame = +2
Query: 125 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDN 250
M EA+L +S+L+++ E+IKD+++ DCD+ G++LQAMD+
Sbjct: 1 MLEAKLQHASVLRRLFESIKDMVSDVNLDCDETGLRLQAMDS 42
>UniRef50_A7AVH8 Cluster: Proliferating cell nuclear antigen 1; n=1;
Babesia bovis|Rep: Proliferating cell nuclear antigen 1
- Babesia bovis
Length = 277
Score = 59.3 bits (137), Expect = 4e-08
Identities = 25/61 (40%), Positives = 41/61 (67%)
Frame = +1
Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFE 435
V+LV L L GF YRCDR ++G+NL S++K K + D+V I++++ D ++F+FE
Sbjct: 45 VALVHLKLHESGFSLYRCDRPRALGINLNSVTKAFKSCSNHDSVLIQSEEEKDYISFIFE 104
Query: 436 S 438
+
Sbjct: 105 N 105
>UniRef50_Q98SC0 Cluster: Proliferating cell nuclear antigen; n=1;
Guillardia theta|Rep: Proliferating cell nuclear antigen
- Guillardia theta (Cryptomonas phi)
Length = 258
Score = 57.2 bits (132), Expect = 2e-07
Identities = 27/66 (40%), Positives = 45/66 (68%)
Frame = +1
Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFE 435
VSLVSL + + F+ Y+C++ S+G+NL KILKCA ++D+V I ++N + +TF+F
Sbjct: 45 VSLVSLIIPPEEFEVYQCEKIQSLGINLNWFYKILKCATNEDSVEIIYKNNENFITFLFR 104
Query: 436 SPNQEK 453
+ E+
Sbjct: 105 NEANER 110
Score = 45.2 bits (102), Expect = 7e-04
Identities = 18/42 (42%), Positives = 32/42 (76%)
Frame = +2
Query: 125 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDN 250
M A+L +S+LKK+++A+KDL++ A + ++G+ LQAMD+
Sbjct: 1 MLRAKLSSNSLLKKIVDAVKDLISDANIEFTNSGLSLQAMDS 42
>UniRef50_Q5CJE0 Cluster: Proliferating cell nuclear antigen; n=2;
Cryptosporidium|Rep: Proliferating cell nuclear antigen
- Cryptosporidium hominis
Length = 261
Score = 54.4 bits (125), Expect = 1e-06
Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Frame = +1
Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDT-VTIKA-QDNADN-VTF 426
V+LVSL ++ D F+ YRCDR + +G+++ +SK +K DKDT +T+K DN DN +T
Sbjct: 45 VALVSLNIQPDAFEHYRCDRPVVLGLDMQQLSKFMKFC-DKDTSMTLKKYDDNEDNRITM 103
Query: 427 VFE 435
FE
Sbjct: 104 CFE 106
Score = 50.0 bits (114), Expect = 2e-05
Identities = 21/42 (50%), Positives = 29/42 (69%)
Frame = +2
Query: 125 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDN 250
MFEARL + + KK+ EA+K+L DCD +G+ LQAMD+
Sbjct: 1 MFEARLQNAMLFKKIAEALKELCHDINIDCDSDGLHLQAMDS 42
>UniRef50_Q8WSN0 Cluster: Proliferating cell nuclear antigen 2; n=7;
Plasmodium|Rep: Proliferating cell nuclear antigen 2 -
Plasmodium falciparum
Length = 264
Score = 48.0 bits (109), Expect = 9e-05
Identities = 22/54 (40%), Positives = 34/54 (62%)
Frame = +1
Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADN 417
VSLV L + +D F YRCD+N +G+++ M KIL +K TV + +DN ++
Sbjct: 44 VSLVDLNIVSDFFQHYRCDKNCVLGISINFMLKILSVIKEKSTVFLFKEDNEND 97
Score = 45.2 bits (102), Expect = 7e-04
Identities = 18/41 (43%), Positives = 28/41 (68%)
Frame = +2
Query: 125 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMD 247
MFE R+ KK+ E +KD+ T+ +CD+NGI++Q+MD
Sbjct: 1 MFECRI-DGQFFKKLFETLKDICTEVNLECDENGIKMQSMD 40
>UniRef50_A2F7D4 Cluster: Proliferating cell nuclear antigen,
putative; n=1; Trichomonas vaginalis G3|Rep:
Proliferating cell nuclear antigen, putative -
Trichomonas vaginalis G3
Length = 264
Score = 46.4 bits (105), Expect = 3e-04
Identities = 19/66 (28%), Positives = 39/66 (59%)
Frame = +1
Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFE 435
VSL+S++L AD F+ Y C +++ N+ ++K+LK A D + I + +++T
Sbjct: 45 VSLISISLPADIFNTYNCSEEMNLAFNVDVLNKVLKSASTDDYLKISTEKPNEDITIQLS 104
Query: 436 SPNQEK 453
+ +++K
Sbjct: 105 TQSEDK 110
Score = 36.7 bits (81), Expect = 0.23
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +2
Query: 125 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMD 247
M E ++S KK+++++K L+ +F C +G+ LQAMD
Sbjct: 1 MVEIVFEQASFFKKIIDSLKGLVEDISFKCTSDGMDLQAMD 41
>UniRef50_UPI000049949B Cluster: proliferating cell nuclear antigen;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: proliferating
cell nuclear antigen - Entamoeba histolytica HM-1:IMSS
Length = 262
Score = 45.2 bits (102), Expect = 7e-04
Identities = 26/66 (39%), Positives = 36/66 (54%)
Frame = +1
Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFE 435
VSLVSL + D FD+++C + I++G+NL +SKILK A D D I D+
Sbjct: 47 VSLVSLLIETDAFDEFQCLKPITLGINLTHLSKILK-ALDNDCGLILDVKKVDDAVLSIT 105
Query: 436 SPNQEK 453
S K
Sbjct: 106 SEGTNK 111
Score = 43.2 bits (97), Expect = 0.003
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +2
Query: 128 FEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDN 250
F A+ +++ K+V+E++K + + FDC D GI +Q MDN
Sbjct: 4 FHAKFKEAALFKRVVESLKSTIDKTNFDCSDAGIAVQCMDN 44
>UniRef50_A7AUH5 Cluster: Proliferating cell nuclear antigen; n=3;
Piroplasmida|Rep: Proliferating cell nuclear antigen -
Babesia bovis
Length = 264
Score = 44.8 bits (101), Expect = 9e-04
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTI-KAQDNADNVTFV 429
+SL+ L L D F YRCD ++G+N+ M KIL +K + + + D+ D V FV
Sbjct: 44 ISLIHLCLAPDFFQLYRCDTPCTLGLNISFMLKILAVVREKSVIYLARGDDSEDPVLFV 102
Score = 40.7 bits (91), Expect = 0.014
Identities = 16/42 (38%), Positives = 28/42 (66%)
Frame = +2
Query: 125 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDN 250
MFE RL L+++ EA++++ + DC ++G+ +QAMDN
Sbjct: 1 MFECRL-DGMFLRRLFEALREICNDVSIDCSEDGLSMQAMDN 41
>UniRef50_A0RXH7 Cluster: DNA polymerase sliding clamp subunit; n=2;
Thermoprotei|Rep: DNA polymerase sliding clamp subunit -
Cenarchaeum symbiosum
Length = 248
Score = 44.4 bits (100), Expect = 0.001
Identities = 17/52 (32%), Positives = 31/52 (59%)
Frame = +1
Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNA 411
V+L+ ++ F+KY CD NI G+ + +K++K A KD++TI ++
Sbjct: 46 VALIDISWPNSAFEKYECDSNIKFGVRIDEFTKLIKRADKKDSITISVSKDS 97
>UniRef50_Q84513 Cluster: Probable DNA polymerase sliding clamp 1;
n=3; Chlorovirus|Rep: Probable DNA polymerase sliding
clamp 1 - Paramecium bursaria Chlorella virus 1 (PBCV-1)
Length = 262
Score = 44.4 bits (100), Expect = 0.001
Identities = 18/51 (35%), Positives = 33/51 (64%)
Frame = +1
Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDN 408
VSLV L L ++ F++Y+C+ +G+N+ +M K+L+ AG D++ + N
Sbjct: 51 VSLVHLKLDSESFEEYKCEHTYELGVNVLNMFKLLRSAGSHDSILFRYLKN 101
>UniRef50_Q7QSA2 Cluster: Proliferating cell nuclear antigen; n=1;
Giardia lamblia ATCC 50803|Rep: Proliferating cell
nuclear antigen - Giardia lamblia ATCC 50803
Length = 299
Score = 42.7 bits (96), Expect = 0.004
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +1
Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDN-ADNVTFVF 432
++L+SL L F +RC+R S+G+ S K++K + D VT+ + N +D + +
Sbjct: 51 IALISLHLPTQFFKNFRCERACSLGVRTASFLKVIKFCSNDDLVTLSQRSNSSDQLDILV 110
Query: 433 ES 438
ES
Sbjct: 111 ES 112
>UniRef50_Q4A3A5 Cluster: Putative proliferating cell nuclear
antigen; n=1; Emiliania huxleyi virus 86|Rep: Putative
proliferating cell nuclear antigen - Emiliania huxleyi
virus 86
Length = 259
Score = 41.1 bits (92), Expect = 0.011
Identities = 17/42 (40%), Positives = 30/42 (71%)
Frame = +2
Query: 125 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDN 250
MFE + + +L++V+E I +L+ + FDC +NG+ +QAMD+
Sbjct: 1 MFECKG-NAGLLRRVIECIAELIIECRFDCSENGMVVQAMDS 41
Score = 39.9 bits (89), Expect = 0.025
Identities = 19/66 (28%), Positives = 35/66 (53%)
Frame = +1
Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFE 435
V L ++ L DGF Y C + + + + + KIL C+G DT T++ + + +FE
Sbjct: 44 VCLAAINLLRDGFLHYDCSQPLVIDIPIDKFKKILACSGPDDTFTLRF-NGGSVLLIMFE 102
Query: 436 SPNQEK 453
+P ++
Sbjct: 103 TPAHDR 108
>UniRef50_A7KA48 Cluster: Putative uncharacterized protein Z788R;
n=3; Chlorovirus|Rep: Putative uncharacterized protein
Z788R - Chlorella virus ATCV-1
Length = 292
Score = 40.7 bits (91), Expect = 0.014
Identities = 15/47 (31%), Positives = 31/47 (65%)
Frame = +1
Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIK 396
VSLV + L A+ F++Y C+ +G+N+ ++ K+L+ G +D++ +
Sbjct: 80 VSLVHMKLDAEAFEEYVCNNTYEIGVNVTNLFKLLRTTGSRDSIMFR 126
>UniRef50_O10308 Cluster: Probable DNA polymerase sliding clamp;
n=4; Nucleopolyhedrovirus|Rep: Probable DNA polymerase
sliding clamp - Orgyia pseudotsugata multicapsid
polyhedrosis virus (OpMNPV)
Length = 249
Score = 38.7 bits (86), Expect = 0.058
Identities = 15/39 (38%), Positives = 27/39 (69%)
Frame = +2
Query: 131 EARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMD 247
EA ++ + ++ A++ LLT ATFDCD +G++L ++D
Sbjct: 2 EATFATAAAFQSIVGALRGLLTHATFDCDAHGMRLHSLD 40
>UniRef50_Q64803 Cluster: 20.6 kDa protein; n=1; Autographa
californica nucleopolyhedrovirus|Rep: 20.6 kDa protein -
Autographa californica nuclear polyhedrosis virus
(AcMNPV)
Length = 187
Score = 36.3 bits (80), Expect = 0.31
Identities = 21/41 (51%), Positives = 23/41 (56%)
Frame = -2
Query: 243 IACN*IPLSSQSKVACVSRSLIASKTFFKIELRSKRASNMF 121
I C P SQSKVAC SRSL S + FK ASN+F
Sbjct: 33 ITCMLTPRLSQSKVACGSRSLKVSTSLFKTAPVLNSASNIF 73
>UniRef50_Q4KT14 Cluster: PCNA; n=2; Nucleopolyhedrovirus|Rep: PCNA
- Chrysodeixis chalcites nucleopolyhedrovirus
Length = 263
Score = 35.9 bits (79), Expect = 0.41
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +1
Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDN 408
+S + LT+ + F + +N+S+ + + + KILK D +TI + +N
Sbjct: 45 ISFIKLTMMKEAFKSFTFTKNLSLSVKMSGLCKILKTCTDASVLTIWSGEN 95
>UniRef50_Q016T8 Cluster: Chromosome 06 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 06 contig 1, DNA
sequence - Ostreococcus tauri
Length = 101
Score = 35.5 bits (78), Expect = 0.54
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = -2
Query: 222 LSSQSKVACVSRSLIASKTFFKIELRSKRASNM 124
+ S SK+A V+RSL S+TF +I KRASNM
Sbjct: 59 VGSASKLASVTRSLTESRTFLRIAPSVKRASNM 91
>UniRef50_A3HAI1 Cluster: DNA polymerase sliding clamp; n=1;
Caldivirga maquilingensis IC-167|Rep: DNA polymerase
sliding clamp - Caldivirga maquilingensis IC-167
Length = 297
Score = 35.1 bits (77), Expect = 0.71
Identities = 16/52 (30%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = +1
Query: 259 SLVSLTLRADGFDKYR-CDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNA 411
++V L + FD+Y +++I++G+N + KIL+ AG +VT + ++N+
Sbjct: 95 AMVDLYMPRTAFDEYPDVEQDINIGVNFSEVKKILQRAGKGSSVTFEVEENS 146
>UniRef50_A2BN98 Cluster: DNA polymerase sliding clamp B2; n=1;
Hyperthermus butylicus DSM 5456|Rep: DNA polymerase
sliding clamp B2 - Hyperthermus butylicus (strain DSM
5456 / JCM 9403)
Length = 246
Score = 34.7 bits (76), Expect = 0.94
Identities = 13/58 (22%), Positives = 31/58 (53%)
Frame = +1
Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFV 429
V ++++ D F+ + D + +G+N ++K+L+ A +D + I + N + F+
Sbjct: 45 VIMLNMRFPRDSFEVFEVDSKVELGVNFEDVAKVLRRASKEDKLEITSDGNTVSFAFI 102
>UniRef50_Q8SRV9 Cluster: Proliferating cell nuclear antigen; n=1;
Encephalitozoon cuniculi|Rep: Proliferating cell nuclear
antigen - Encephalitozoon cuniculi
Length = 267
Score = 33.9 bits (74), Expect = 1.6
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILK 363
V+ + L + F KYRCDR + +G+ L ++ KI+K
Sbjct: 57 VAFADIFLSSTMFTKYRCDRELVIGVQLKTLIKIIK 92
>UniRef50_Q9NGR6 Cluster: Proliferating cell nuclear antigen 2; n=1;
Toxoplasma gondii|Rep: Proliferating cell nuclear
antigen 2 - Toxoplasma gondii
Length = 272
Score = 33.5 bits (73), Expect = 2.2
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +1
Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTV 387
V++V + L D F KYRCDR + +G+++ ++ L+ +T+
Sbjct: 29 VAVVDVRLAVDLFHKYRCDRPVQLGLSVPNLLLALQPVKSAETL 72
>UniRef50_O73947 Cluster: DNA polymerase sliding clamp; n=7;
Thermococcaceae|Rep: DNA polymerase sliding clamp -
Pyrococcus furiosus
Length = 249
Score = 33.5 bits (73), Expect = 2.2
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTI-KAQDNADNVT 423
V L+ L L + F KY ++G+N+ + KILK KDT+ + K ++N +T
Sbjct: 46 VVLIDLNLPSSIFSKYEVVEPETIGVNMDHLKKILKRGKAKDTLILKKGEENFLEIT 102
>UniRef50_O27367 Cluster: DNA polymerase sliding clamp; n=3;
Methanobacteriaceae|Rep: DNA polymerase sliding clamp -
Methanobacterium thermoautotrophicum
Length = 244
Score = 33.1 bits (72), Expect = 2.9
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +1
Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFE 435
++ V L L+A+ FD+Y CD + ++ + K+LK A D V + + N+ FE
Sbjct: 45 ITYVHLELKAELFDEYVCDEPERINVDTEELMKVLKRAKANDRVILSTDEG--NLIIQFE 102
>UniRef50_Q4UH03 Cluster: Putative uncharacterized protein; n=3;
Theileria|Rep: Putative uncharacterized protein -
Theileria annulata
Length = 2579
Score = 32.7 bits (71), Expect = 3.8
Identities = 17/42 (40%), Positives = 28/42 (66%)
Frame = +2
Query: 74 LLLIFNKIIEVIH*NINMFEARLLRSSILKKVLEAIKDLLTQ 199
+LL+F++I+ N ++F ++ SILK+VLE I LLT+
Sbjct: 430 ILLVFSRILH----NKDIFHPLIVNPSILKRVLECIDSLLTE 467
>UniRef50_O41056 Cluster: Probable DNA polymerase sliding clamp 2;
n=3; Chlorovirus|Rep: Probable DNA polymerase sliding
clamp 2 - Paramecium bursaria Chlorella virus 1 (PBCV-1)
Length = 264
Score = 32.7 bits (71), Expect = 3.8
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 229 SVTGYGQLSVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIK-AQD 405
SV VSLV+L + F Y + ++G+ + + +IL C G+ D +TI D
Sbjct: 50 SVQSMDTSHVSLVNLKIGKSYFKDYSIAQEATVGIKISNFVRILDCVGN-DEITISFTYD 108
Query: 406 NADNV 420
N D +
Sbjct: 109 NPDEL 113
>UniRef50_Q9NA32 Cluster: Putative uncharacterized protein; n=3;
Bilateria|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 169
Score = 32.3 bits (70), Expect = 5.0
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +1
Query: 259 SLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFES 438
S++ L +RA GF ++ + N M+ ++ GD + K++D N+T+V
Sbjct: 3 SVLRLAMRAKGFSRFLAETQAFPVKNRHFMTSSVRKTGDFEYEDPKSEDEVVNITYVLRD 62
Query: 439 PNQEK 453
+ K
Sbjct: 63 GTERK 67
>UniRef50_Q6LWJ8 Cluster: DNA polymerase sliding clamp; n=8;
cellular organisms|Rep: DNA polymerase sliding clamp -
Methanococcus maripaludis
Length = 250
Score = 32.3 bits (70), Expect = 5.0
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2
Query: 161 KKVLEAIKDLLTQATFDCDDNGIQLQAMD 247
KKV+ A +L+ + F+ D+NGI+ AMD
Sbjct: 12 KKVINATSNLVDEICFEVDENGIKASAMD 40
>UniRef50_UPI0000E80376 Cluster: PREDICTED: hypothetical protein;
n=2; Gallus gallus|Rep: PREDICTED: hypothetical protein
- Gallus gallus
Length = 523
Score = 31.5 bits (68), Expect = 8.7
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 349 SKILKCAGDKDTVTIKAQDNADNVTFVFESPNQ 447
SK+L C D DTVT + N++FV+++P+Q
Sbjct: 108 SKLLSCFEDGDTVTHSDKSLKRNLSFVWKAPDQ 140
>UniRef50_Q3LWE0 Cluster: Proliferating cell nuclear antigen; n=1;
Bigelowiella natans|Rep: Proliferating cell nuclear
antigen - Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 258
Score = 31.5 bits (68), Expect = 8.7
Identities = 11/29 (37%), Positives = 24/29 (82%)
Frame = +2
Query: 164 KVLEAIKDLLTQATFDCDDNGIQLQAMDN 250
K+ E++KDLL+++TF+ +N + +Q++D+
Sbjct: 14 KLFESMKDLLSESTFEFKENFLTIQSIDH 42
>UniRef50_Q4JAI6 Cluster: DNA polymerase sliding clamp 1; n=6;
Sulfolobaceae|Rep: DNA polymerase sliding clamp 1 -
Sulfolobus acidocaldarius
Length = 247
Score = 31.5 bits (68), Expect = 8.7
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +1
Query: 193 DTGHFRLR*QWNSVTGYGQLSVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAG 372
D G F + + + VSL+++ L + F +Y + G N ++KIL A
Sbjct: 23 DEGLFEIGQDGIRLVAVDKAHVSLINIELYKELFKEYEVEDEFKFGFNSQYLAKILSIAK 82
Query: 373 DKDTVTIKAQDNADNV 420
K+ ++I++ D+ + V
Sbjct: 83 RKEEISIES-DSPERV 97
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 387,893,699
Number of Sequences: 1657284
Number of extensions: 6736914
Number of successful extensions: 14160
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 13824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14160
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 23511729640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -