Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30274
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr 2|||M...    81   6e-17
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    27   1.0  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.0  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    25   5.4  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   5.4  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.4  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   7.2  
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc...    24   9.5  
SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ...    24   9.5  

>SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 81.4 bits (192), Expect = 6e-17
 Identities = 32/66 (48%), Positives = 53/66 (80%)
 Frame = +1

Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFE 435
           V+LVS+ +++DGF+ YRCDRNI++G+NL ++SK+L+CA ++D VT+KA+D  + +  VFE
Sbjct: 45  VALVSMLIKSDGFEPYRCDRNIALGINLNALSKVLRCAQNEDLVTLKAEDTPEVLNLVFE 104

Query: 436 SPNQEK 453
           S   ++
Sbjct: 105 SEKNDR 110



 Score = 60.9 bits (141), Expect = 9e-11
 Identities = 26/42 (61%), Positives = 36/42 (85%)
 Frame = +2

Query: 125 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDN 250
           M EAR  ++++LKK+L+AIK+L+T A FDC+DNGI LQAMD+
Sbjct: 1   MLEARFQQAALLKKLLDAIKELVTDANFDCNDNGISLQAMDS 42


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 355 SLTCCLDSCPLRCSYRSGTC 296
           SL+C  DSC + C    GTC
Sbjct: 435 SLSCHSDSCKVSCQNEDGTC 454


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 74  LLLIFNKIIEVIH*NINMFEARLLRSSILKKVLEAIKD 187
           L +  N+ +  IH  I+ +EAR++   IL K+ E +++
Sbjct: 462 LSISLNENVRAIHKLISRYEARIVSPEILTKIQEQVEN 499


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 161 KKVLEAIKDLLTQATFDCDDNGIQLQA 241
           K+V  +  D+LTQ T  C D+ +++++
Sbjct: 436 KEVPSSFTDILTQKTIPCKDHKLKIKS 462


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 128 FEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQL 235
           FE    R   L +++    D L    FD D+N I++
Sbjct: 227 FEIPSTRPPSLDQLIHLFNDFLRHPVFDFDENAIEM 262


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 9   LSFILHSCFNLFVS*GSLT 65
           LSFIL  CF+LF+S  S +
Sbjct: 192 LSFILFPCFSLFLSSNSFS 210


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 434 SKTNVTLSALSCAFIV 387
           S TNV LSAL CA+ +
Sbjct: 186 SSTNVLLSALRCAYYI 201


>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 143 LRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDN 250
           LR++    VL+  KD++T      D + +   +MDN
Sbjct: 206 LRNNHCSHVLKGHKDIITSLAISKDGSSLLSNSMDN 241


>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 364 CAGDKDTVTIKAQDNADNVTFVFESP 441
           C  D D + +K  D+  +  +V+ESP
Sbjct: 181 CILDSDLLVLKNMDDIFDTPYVYESP 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,677,414
Number of Sequences: 5004
Number of extensions: 30193
Number of successful extensions: 81
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)