Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30274
         (454 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1136 + 34369994-34370312,34370398-34370550,34370648-343707...   102   1e-22
06_01_0984 + 7640574-7641689                                           29   1.7  
01_06_1430 - 37309737-37309946,37310049-37310100,37310348-373104...    28   3.1  
11_01_0191 + 1508509-1508749,1508852-1509204,1509860-1510002,151...    28   4.0  
01_07_0055 + 40782559-40782882,40784448-40784551,40784759-40784768     28   4.0  
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716...    27   5.3  
11_08_0059 + 28104958-28105827                                         27   7.1  
02_05_0688 - 30918499-30919602                                         27   7.1  

>02_05_1136 +
           34369994-34370312,34370398-34370550,34370648-34370745,
           34371563-34371784
          Length = 263

 Score =  102 bits (245), Expect = 1e-22
 Identities = 43/66 (65%), Positives = 58/66 (87%)
 Frame = +1

Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFE 435
           V+LV+L LR++GF+ YRCDRN+SMGMNL +M+K+L+CAG+ D +TIKA D +D VTF+FE
Sbjct: 45  VALVALLLRSEGFEHYRCDRNLSMGMNLNNMAKMLRCAGNDDIITIKADDGSDTVTFMFE 104

Query: 436 SPNQEK 453
           SPNQ+K
Sbjct: 105 SPNQDK 110



 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 25/42 (59%), Positives = 32/42 (76%)
 Frame = +2

Query: 125 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDN 250
           M E RL++ S+LKKVLEAI++L+T A FDC   G  LQAMD+
Sbjct: 1   MLELRLVQGSLLKKVLEAIRELVTDANFDCSGTGFSLQAMDS 42


>06_01_0984 + 7640574-7641689
          Length = 371

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -3

Query: 377 LSPAHLRIFDMLPRFMPIEMFLSQRYLSKPSARRVSDTRDTESCP*PVTEFHCHRN 210
           L+ A   + D+LPR +P  ++L    L+    RR+ +TR   +      E+ CH N
Sbjct: 143 LNYARNHLADLLPRCVPRAIYLDSDVLAVDDVRRLWETRLPAAAVVAAPEY-CHAN 197


>01_06_1430 -
           37309737-37309946,37310049-37310100,37310348-37310427,
           37310538-37310606,37310710-37310843,37311173-37311332,
           37311483-37311554,37312113-37312246,37312386-37312521,
           37313273-37313416
          Length = 396

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 343 SMSKILKCAGDK-DTVTIKAQDNADNVTFVFESP 441
           S+ K+    G K + +++K Q  ADN+ F FE P
Sbjct: 238 SLEKVFSEVGSKSEMLSVKLQREADNLLFNFEEP 271


>11_01_0191 +
           1508509-1508749,1508852-1509204,1509860-1510002,
           1510195-1510256,1510406-1510479,1510812-1510864,
           1511072-1513550
          Length = 1134

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 443 FGLSKTNVTLSALSCAFIVTVSLSPAHLRIF 351
           FGL KT +TL+ L C+F   +  S   L +F
Sbjct: 272 FGLPKTCITLTKLDCSFQANIIYSRCILGMF 302


>01_07_0055 + 40782559-40782882,40784448-40784551,40784759-40784768
          Length = 145

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 437 LSKTNVTLSALSCAFIVTVSLSPAHL 360
           +  TN+ LS L  AF++++SLSP  L
Sbjct: 1   MQTTNLFLSVLEFAFLISLSLSPQSL 26


>01_01_0908 +
           7158172-7158356,7159436-7159866,7159953-7161061,
           7161372-7162820
          Length = 1057

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 361 KCAGDKDTVTIKAQDNADNVTFVFESPNQEK 453
           K   D D V + A+D +D  + VF++ +Q+K
Sbjct: 648 KTTADDDCVIVAAKDGSDYASSVFDTNSQQK 678


>11_08_0059 + 28104958-28105827
          Length = 289

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +1

Query: 142 TPKLYLKEGLGGY*RSA-DTGHFR-LR*QWNSVTGYGQLSVSLVSLTLRADGFDKYRCDR 315
           T  ++ + G  G  R A DTGH+  +   + SV G+G+ S+ L    LR  G D   C R
Sbjct: 31  TAVIWGRHGDEGTLREACDTGHYNTVIISFLSVFGHGRYSLDLSGHDLRRVGNDIKHCQR 90


>02_05_0688 - 30918499-30919602
          Length = 367

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -3

Query: 377 LSPAHLRIFDMLPRFMPIEMFLSQRYLSKPSARRVSDTRDTESCP*PVTEFHCHRN 210
           L+ A   + D+LP+ +P  ++L    L+    RR+ +TR   +      E+ CH N
Sbjct: 144 LNYARNYLADLLPKCVPRAIYLDSDVLAVDDVRRLWETRLPAAAVVAAPEY-CHAN 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,189,830
Number of Sequences: 37544
Number of extensions: 177443
Number of successful extensions: 347
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)