Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30274
         (454 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23876| Best HMM Match : PCNA_C (HMM E-Value=0)                      94   6e-20
SB_21088| Best HMM Match : PLAT (HMM E-Value=1.7e-18)                  27   5.5  
SB_50927| Best HMM Match : DEAD (HMM E-Value=3.2e-06)                  27   7.3  
SB_25| Best HMM Match : No HMM Matches (HMM E-Value=.)                 27   7.3  
SB_36449| Best HMM Match : RnaseH (HMM E-Value=0.92)                   27   7.3  
SB_23489| Best HMM Match : DUF1393 (HMM E-Value=0.56)                  27   7.3  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_23876| Best HMM Match : PCNA_C (HMM E-Value=0)
          Length = 225

 Score = 93.9 bits (223), Expect = 6e-20
 Identities = 41/66 (62%), Positives = 51/66 (77%)
 Frame = +1

Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFE 435
           V LVS+ L ADGFD YRCDR +S+GM    +SKI+KCAG++D +TI A+D  D VTF FE
Sbjct: 6   VCLVSVQLNADGFDPYRCDRTLSIGMKTSLLSKIIKCAGNEDRITIHAEDTGDTVTFSFE 65

Query: 436 SPNQEK 453
           SPN+EK
Sbjct: 66  SPNEEK 71


>SB_21088| Best HMM Match : PLAT (HMM E-Value=1.7e-18)
          Length = 240

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 301 YRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFE 435
           + CDR +++  + G + ++L  + DKD  T K   N    T +F+
Sbjct: 112 FMCDRWLALEKDDGMVDRVLLVSTDKDLKTFKTLFNTKVSTDLFD 156


>SB_50927| Best HMM Match : DEAD (HMM E-Value=3.2e-06)
          Length = 368

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -2

Query: 222 LSSQSKVACVSRSLIASKTFFKIELRSKRASNMFIF*CITSIIL 91
           +S   +VA      +     FK+ L SK++S+  +  C T I+L
Sbjct: 38  MSVAERVAAERAEKLGDSVGFKVRLESKQSSSTRLLYCTTGILL 81


>SB_25| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 627

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 370 GDKDTVTIKAQDNADNVTFVFESPNQ 447
           G+ DT+T+K QDN D+     E P +
Sbjct: 434 GNYDTLTLKLQDNLDHYEKYSEKPKE 459


>SB_36449| Best HMM Match : RnaseH (HMM E-Value=0.92)
          Length = 655

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +2

Query: 98  IEVIH*NINMFEARLLRSSILKKVLEAIKDLLTQA-TFDCDDN 223
           ++VI    N  + + L    L+ +LEA+K+LL Q+ +F C+++
Sbjct: 14  LQVIQAITNYLDKKELEVDKLQAILEAVKNLLNQSLSFLCEES 56


>SB_23489| Best HMM Match : DUF1393 (HMM E-Value=0.56)
          Length = 223

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 152 SFGVNVPQTCLYFNVSLQ*FC*KL 81
           S+G N+P  C++ N+S+  F  K+
Sbjct: 42  SYGCNIPLVCIFLNISIGTFAQKV 65


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 444  IWALKNKCDIVSIILCFYCNCILISSTF 361
            I+ L+NKC +VS +  ++C  + + S F
Sbjct: 2871 IFMLRNKCYLVSCVDEYHCQSVEVKSEF 2898


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,417,960
Number of Sequences: 59808
Number of extensions: 224195
Number of successful extensions: 500
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)