Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30274
         (454 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna (prolife...    71   4e-13
AL132862-22|CAB70233.1|  169|Caenorhabditis elegans Hypothetical...    32   0.17 
Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical pr...    27   6.4  

>AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna
           (proliferating cell nuclearantigen) homolog protein 1
           protein.
          Length = 229

 Score = 70.9 bits (166), Expect = 4e-13
 Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
 Frame = +1

Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDN-ADNVTFVF 432
           V+LVSL L    FD YRCDR I++G++L +MSK LKCA + DT  +K ++N  D++ F F
Sbjct: 11  VALVSLKLEVGLFDTYRCDRTINLGLSLANMSKALKCANNDDTCMLKYEENEGDSIIFTF 70

Query: 433 ESPNQEK 453
             P ++K
Sbjct: 71  ADPKRDK 77


>AL132862-22|CAB70233.1|  169|Caenorhabditis elegans Hypothetical
           protein Y73F8A.27 protein.
          Length = 169

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +1

Query: 259 SLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFES 438
           S++ L +RA GF ++  +       N   M+  ++  GD +    K++D   N+T+V   
Sbjct: 3   SVLRLAMRAKGFSRFLAETQAFPVKNRHFMTSSVRKTGDFEYEDPKSEDEVVNITYVLRD 62

Query: 439 PNQEK 453
             + K
Sbjct: 63  GTERK 67


>Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical protein
            T16G12.1 protein.
          Length = 1890

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 223  WNSVTGYGQLSVSLVSLTLRADGFD 297
            WNS    GQLS  + +LTL  D FD
Sbjct: 929  WNSYFREGQLSTLMNTLTLTNDQFD 953


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,307,203
Number of Sequences: 27780
Number of extensions: 170251
Number of successful extensions: 335
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)