Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30274
         (454 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29570.1 68415.m03591 proliferating cell nuclear antigen 2 (P...   106   8e-24
At1g07370.1 68414.m00786 proliferating cell nuclear antigen 1 (P...   105   1e-23
At3g01190.1 68416.m00025 peroxidase 27 (PER27) (P27) (PRXR7) ide...    27   7.8  

>At2g29570.1 68415.m03591 proliferating cell nuclear antigen 2
           (PCNA2) identical to SP|Q9ZW35 Proliferating cell
           nuclear antigen 2 (PCNA 2) {Arabidopsis thaliana};
           nearly identical to SP|Q43124 Proliferating cell nuclear
           antigen (PCNA) {Brassica napus}; contains Pfam profiles
           PF00705: Proliferating cell nuclear antigen N-terminal
           domain, PF02747: Proliferating cell nuclear antigen
           C-terminal domain
          Length = 264

 Score =  106 bits (254), Expect = 8e-24
 Identities = 46/66 (69%), Positives = 58/66 (87%)
 Frame = +1

Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFE 435
           V+LVSL LR++GF+ YRCDRN+SMGMNLG+MSK+LKCAG+ D +TIKA D +D VTF+FE
Sbjct: 45  VALVSLLLRSEGFEHYRCDRNLSMGMNLGNMSKMLKCAGNDDIITIKADDGSDTVTFMFE 104

Query: 436 SPNQEK 453
           SP Q+K
Sbjct: 105 SPTQDK 110



 Score = 56.8 bits (131), Expect = 6e-09
 Identities = 25/42 (59%), Positives = 31/42 (73%)
 Frame = +2

Query: 125 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDN 250
           M E RL++ S+LKKVLEA+KDL+  A FDC   G  LQAMD+
Sbjct: 1   MLELRLVQGSLLKKVLEAVKDLVNDANFDCSTTGFSLQAMDS 42


>At1g07370.1 68414.m00786 proliferating cell nuclear antigen 1
           (PCNA1) identical to SP|Q9M7Q7 Proliferating cellular
           nuclear antigen 1 (PCNA 1) {Arabidopsis thaliana};
           nearly identical to SP|Q43124 Proliferating cell nuclear
           antigen (PCNA) {Brassica napus}; contains Pfam profiles
           PF00705: Proliferating cell nuclear antigen N-terminal
           domain, PF02747: Proliferating cell nuclear antigen
           C-terminal domain
          Length = 263

 Score =  105 bits (253), Expect = 1e-23
 Identities = 46/66 (69%), Positives = 57/66 (86%)
 Frame = +1

Query: 256 VSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFE 435
           V+LVSL LR++GF+ YRCDRN+SMGMNLG+MSK+LKCAG+ D +TIKA D  D VTF+FE
Sbjct: 45  VALVSLLLRSEGFEHYRCDRNLSMGMNLGNMSKMLKCAGNDDIITIKADDGGDTVTFMFE 104

Query: 436 SPNQEK 453
           SP Q+K
Sbjct: 105 SPTQDK 110



 Score = 56.4 bits (130), Expect = 8e-09
 Identities = 25/42 (59%), Positives = 31/42 (73%)
 Frame = +2

Query: 125 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDN 250
           M E RL++ S+LKKVLE+IKDL+  A FDC   G  LQAMD+
Sbjct: 1   MLELRLVQGSLLKKVLESIKDLVNDANFDCSSTGFSLQAMDS 42


>At3g01190.1 68416.m00025 peroxidase 27 (PER27) (P27) (PRXR7)
           identical to SP|Q43735 Peroxidase 27 precursor (EC
           1.11.1.7) (Atperox P27) (PRXR7) (ATP12a) {Arabidopsis
           thaliana}
          Length = 321

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 123 FIF*CITSIILLKINNNAKQSATPNL 46
           F+  C  S++L K NN  ++SA PNL
Sbjct: 69  FVRGCDGSVLLDKPNNQGEKSAVPNL 94


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,575,189
Number of Sequences: 28952
Number of extensions: 151750
Number of successful extensions: 307
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)