Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30272
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 149 2e-37
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 146 1e-36
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 81 1e-16
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 49 4e-07
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.13
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 0.90
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 27 2.1
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 2.7
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe... 26 2.7
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 26 2.7
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 2.7
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.6
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 26 3.6
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 4.8
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 25 6.3
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac... 25 8.4
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 25 8.4
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 149 bits (362), Expect = 2e-37
Identities = 67/82 (81%), Positives = 74/82 (90%)
Frame = +1
Query: 4 QIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEIT 183
Q+VSSITASLRF+G+LNVDL EFQTNLVPYPRIHFPLVTYAP++SA KA+HE SV EIT
Sbjct: 233 QVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEIT 292
Query: 184 NACFEPANQMVKCDPRHGKYMA 249
N CFEP NQMVKCDPR G+YMA
Sbjct: 293 NQCFEPYNQMVKCDPRAGRYMA 314
Score = 138 bits (334), Expect = 4e-34
Identities = 59/80 (73%), Positives = 70/80 (87%)
Frame = +3
Query: 255 MLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC 434
+LYRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI +PP + G ++AKV RAVC
Sbjct: 317 LLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVC 376
Query: 435 MLSNTTAIAEAWARLDHKFD 494
MLSNTT+IAEAW+RLDHKFD
Sbjct: 377 MLSNTTSIAEAWSRLDHKFD 396
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 146 bits (355), Expect = 1e-36
Identities = 66/82 (80%), Positives = 73/82 (89%)
Frame = +1
Query: 4 QIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEIT 183
Q+VSSITASLRF G+LNVDL EFQTNLVPYPRIHFPLVTY+P++SA KA+HE SV EIT
Sbjct: 237 QVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEIT 296
Query: 184 NACFEPANQMVKCDPRHGKYMA 249
N CFEP NQMVKCDPR G+YMA
Sbjct: 297 NQCFEPYNQMVKCDPRTGRYMA 318
Score = 142 bits (345), Expect = 2e-35
Identities = 60/80 (75%), Positives = 72/80 (90%)
Frame = +3
Query: 255 MLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC 434
+LYRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+PP VPG +AKV RAVC
Sbjct: 321 LLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVC 380
Query: 435 MLSNTTAIAEAWARLDHKFD 494
MLSNTT+IAEAW+RLDHKFD
Sbjct: 381 MLSNTTSIAEAWSRLDHKFD 400
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 80.6 bits (190), Expect = 1e-16
Identities = 33/80 (41%), Positives = 52/80 (65%)
Frame = +1
Query: 7 IVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITN 186
+++ +T S RF G LN DL + N+VP+PR+HF +V +AP+ + + + +SV E+T
Sbjct: 232 VMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQ 291
Query: 187 ACFEPANQMVKCDPRHGKYM 246
F+ N MV DPRHG+Y+
Sbjct: 292 QMFDANNMMVAADPRHGRYL 311
Score = 39.9 bits (89), Expect = 2e-04
Identities = 24/80 (30%), Positives = 41/80 (51%)
Frame = +3
Query: 258 LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCM 437
L+RG V K+V+ I +++TK + FV+W P + PP DL + +
Sbjct: 316 LFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATF 367
Query: 438 LSNTTAIAEAWARLDHKFDS 497
+ N+T+I E + RL +F +
Sbjct: 368 IGNSTSIQEIFRRLGDQFSA 387
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 48.8 bits (111), Expect = 4e-07
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Frame = +1
Query: 7 IVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS---AEKAYHEQLSVAE 177
++S+ T +LR+ G +N DL +L+P PR HF L +Y P + E + +V +
Sbjct: 235 VMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLD 294
Query: 178 ITNACFEPANQMVKCDP 228
+ P NQMV +P
Sbjct: 295 VMRRLLLPKNQMVSVNP 311
Score = 37.9 bits (84), Expect = 8e-04
Identities = 20/82 (24%), Positives = 43/82 (52%)
Frame = +3
Query: 249 LLMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRA 428
+L + +G+ P DV+ ++ I+ +R F+ W P +V ++ + P + ++ +
Sbjct: 320 ILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL--- 376
Query: 429 VCMLSNTTAIAEAWARLDHKFD 494
ML+N T+IA + R ++D
Sbjct: 377 --MLANHTSIASLFKRTLDQYD 396
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 30.7 bits (66), Expect = 0.13
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 265 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 399
VV P + RP++P P LS V PV+ V + PP P
Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
Score = 25.0 bits (52), Expect = 6.3
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = +1
Query: 265 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 399
VV P + RP++P P S PV V + PP P
Sbjct: 642 VVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVP 686
Score = 24.6 bits (51), Expect = 8.4
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +1
Query: 268 VTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPE 402
V S P+ P +P PSV + V P + SV P PE
Sbjct: 541 VPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPE 585
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 0.90
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +2
Query: 65 PSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTR 211
P+++ P S + T +SS+P P N+ PSP S + AS+ P R
Sbjct: 1232 PTAKAPPVPAPSSEAPSVSTPRSSVPS-PHSNASPSPTSSSMASAAPAR 1279
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 26.6 bits (56), Expect = 2.1
Identities = 18/64 (28%), Positives = 24/64 (37%)
Frame = +3
Query: 234 WQVHGLLMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLA 413
W+ Y + KDVN + TI +W PTG ++ Y V D
Sbjct: 141 WRHSSFAQYYLYNTETKDVNM-LGQDNEHWTISLAEWSPTGHQLSFVYNNDLYVRKND-G 198
Query: 414 KVQR 425
VQR
Sbjct: 199 NVQR 202
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 2.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 128 QSSLPRRPTMNSFPSPRSQTHASSPPTR 211
+ SLPRRP+ +P S T ++ PP +
Sbjct: 738 RGSLPRRPSSALLTNPISITKSNPPPVK 765
>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 26.2 bits (55), Expect = 2.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 297 PRSHPWVRRHHGTASASHVLAM 232
P + WV RH G+ SA H L +
Sbjct: 468 PWVYEWVSRHRGSISAEHGLGL 489
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 26.2 bits (55), Expect = 2.7
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +3
Query: 240 VHGLLMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQ 380
V G + L R ++ + N AIA+I +I+F ++ P GF ++++
Sbjct: 294 VRGAVRLMRFLMLQEVKNDAIASITLSSSIEFTEF-PLGFNENVDFE 339
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 2.7
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = +1
Query: 301 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 387
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 25.8 bits (54), Expect = 3.6
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 62 SPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSP 202
SPS LT L S++ S + + + R+ T +S SP+ Q+ S+P
Sbjct: 619 SPSKMLT-TLRNNSSTFPSLRKNAMIARKSTADSLSSPKRQSVPSTP 664
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 3.6
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = +2
Query: 89 LTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMAS 241
LTP + S +S + +S +R ++N+ PS + +H+SS T + PV+++
Sbjct: 130 LTPKNPSLFSSSNAAS--QRGSLNTAPSNFAYSHSSSLQTSASSRPPVLSN 178
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 4.8
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 298 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 393
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 25.0 bits (52), Expect = 6.3
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +1
Query: 280 PRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPP 390
PR LP K VL T + VSR TTS P
Sbjct: 293 PRPLLNSKLPRKTLVLDLDETLIHSVSRGSRTTSGQP 329
>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 24.6 bits (51), Expect = 8.4
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -2
Query: 291 SHPWVRRHHGTASASHVL 238
SH W R H G SH++
Sbjct: 58 SHKWTREHSGLFDVSHMV 75
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 46 ALNVDLTEFQTNLVPYPRIHFPLVT 120
A +V++ E +TN +P HFP T
Sbjct: 368 AQSVEVPENETNQIPTTEEHFPATT 392
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,180,994
Number of Sequences: 5004
Number of extensions: 46793
Number of successful extensions: 194
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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