Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30272
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    25   0.33 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   1.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   2.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   3.1  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   3.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.1  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   5.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.1  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 288 HPWVRRHHGTASASHVLAMTGVAFHHLVGGLEACV 184
           H W+RR+       H    TG    H+VGGL   +
Sbjct: 181 HGWMRRNVLNKQHVHFHDYTGSVVIHVVGGLTGLI 215


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 252 LMLYRGDVVPKDVNAAIAT 308
           +M+Y G  V  D+NA IAT
Sbjct: 318 MMMYLGTPVMPDLNALIAT 336


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 438 LSNTTAIAEAWARLDHKFDS 497
           L+NT  +   W  LD+ FD+
Sbjct: 32  LTNTLNVIHKWKYLDYDFDN 51


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 350 NRFQGRYQLPA 382
           NRF G Y++PA
Sbjct: 435 NRFSGEYEIPA 445


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 311 QNQAYYPIRRLVSNRFQGRYQ 373
           Q +A+Y +R   +N FQ +YQ
Sbjct: 17  QAKAHYSLRDFKANIFQVKYQ 37


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 279 VRRHHGTASASHVLAMTGVAFHH 211
           ++RHH   +  H L  T V  HH
Sbjct: 138 LQRHHHLQNHHHHLQSTAVQDHH 160


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/34 (29%), Positives = 13/34 (38%)
 Frame = -2

Query: 282 WVRRHHGTASASHVLAMTGVAFHHLVGGLEACVC 181
           W+    G       + + G    HLVGG  A  C
Sbjct: 165 WIWGDQGFLKKLGAVDIAGSGAVHLVGGSSALAC 198


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 59  TSPSSRLTWCLTPVSTS 109
           TSP+S +  C++P++ S
Sbjct: 582 TSPNSAVRKCMSPINGS 598


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,657
Number of Sequences: 438
Number of extensions: 3344
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)