Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30268
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    42   4e-06
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                28   0.067
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.1  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   5.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   5.8  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   7.7  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 42.3 bits (95), Expect = 4e-06
 Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = +3

Query: 267  WEMYTQAELPFAKXNDSSVLDRLKTGALEWSVPASMPQSVADILKRCWSQSPTDRPQFAE 446
            WE+ +  E P+   ++  V+  ++ G      P   P+++  ++  CW +  T RP FA 
Sbjct: 829  WEVMSYGERPYWNWSNQDVIKSIEKG-YRLPAPMDCPEAIYQLMLDCWQKERTHRPTFAN 887

Query: 447  VCEEIN-IVPTGDHIRK 494
            + + ++ ++ + D +RK
Sbjct: 888  LTQTLDKLIRSPDTLRK 904



 Score = 37.1 bits (82), Expect = 1e-04
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +1

Query: 61  HRDIAARNCLITSKLQLKLSCPALTR--GPLSREYYKLHDQVIPLRWCPLEVVLEGDYST 234
           HRD+AARN L+ + L  K++   L+R     +   Y      IP+RW   E +    +++
Sbjct: 758 HRDLAARNVLVNAALVCKIADFGLSREIESATEGAYTTRGGKIPVRWTAPEAIAFRKFTS 817

Query: 235 KSDVY 249
            SDV+
Sbjct: 818 ASDVW 822


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 0.067
 Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = +3

Query: 267 WEMYTQAELPFAKXNDSSVLDRLKTG--ALEWSVPASMPQSVADILKRCWSQSPTDRPQF 440
           W+M  + +LPFA  +  +++     G   ++ ++      +   + K+ WSQ+ T+RP  
Sbjct: 245 WQMLFR-KLPFAGLHSHTIIYLSAKGHRPIDDNIDDEFKGTYKTLYKQMWSQNITERPTT 303

Query: 441 AEVCEEIN 464
            EV  +I+
Sbjct: 304 NEVITKID 311


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 623 FAYEAVLKVNSHLIISILLGKIRPTFTVIASIILVRLL-NFVEAF 492
           +A+E  +++ +  +    L  I   FT IAS++L+ L  N +E F
Sbjct: 520 YAFERNMRLEAIRLDGNFLSDINGVFTSIASLLLLNLSENHIEWF 564


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +1

Query: 55  LTHRDIAARNCLITSKLQLKLSCPALTRGPLSREYYKLHDQV-IPLRWCPLEVVLEGDYS 231
           L HRD+  +N L+  + + KL+      G    E   L   V  P+   P   +L G Y 
Sbjct: 718 LVHRDVKLKNVLLDIENRAKLT----DFGFCITEVMMLGSIVGTPVHMAP--ELLSGHYD 771

Query: 232 TKSDVY 249
           +  DVY
Sbjct: 772 SSVDVY 777


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +1

Query: 55  LTHRDIAARNCLITSKLQLKLSCPALTRGPLSREYYKLHDQV-IPLRWCPLEVVLEGDYS 231
           L HRD+  +N L+  + + KL+      G    E   L   V  P+   P   +L G Y 
Sbjct: 756 LVHRDVKLKNVLLDIENRAKLT----DFGFCITEVMMLGSIVGTPVHMAP--ELLSGHYD 809

Query: 232 TKSDVY 249
           +  DVY
Sbjct: 810 SSVDVY 815


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +1

Query: 73  AARNCLITSKLQLKLSCPALTRGPLSREYYKLHDQVIPLRW 195
           A  + +I  +++ +L    +   P+  E +  H Q + LRW
Sbjct: 108 ARMHAIIACQMEFQLYPMDIQICPIYIESFSYHKQKLRLRW 148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,170
Number of Sequences: 438
Number of extensions: 3506
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)