Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30267
(729 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.11 |||cofilin/tropomyosin family protein|Schizosaccharo... 27 2.1
SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyc... 27 3.6
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ... 27 3.6
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 27 3.6
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 26 4.8
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 26 4.8
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|... 26 6.3
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 25 8.4
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 8.4
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 25 8.4
>SPAC17H9.11 |||cofilin/tropomyosin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 141
Score = 27.5 bits (58), Expect = 2.1
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Frame = +2
Query: 563 STEKKVLKISQTKYEEI------LKISKKYIFINQVDKSFHEAVDD 682
S+E ++ IS T +EI LK S Y FI +VDK+ E V D
Sbjct: 2 SSEARMFTISDTTMKEIDRFRLRLKKSVMYAFILKVDKATKEIVPD 47
>SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 26.6 bits (56), Expect = 3.6
Identities = 7/22 (31%), Positives = 17/22 (77%)
Frame = -3
Query: 727 ICTITANSNKILLVQIIHSFME 662
+C I + N+++++++IH F+E
Sbjct: 69 VCGIEQDDNELIILEVIHKFVE 90
>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
Str2 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 26.6 bits (56), Expect = 3.6
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Frame = -1
Query: 726 FAPSPLTAIKSCWFKSSTASWKLLSTWFMKMYFF-----DILRISSYFVCDILRTFFSVD 562
+A P+ A+KS ++ S L+ T+FM Y F L++S D+ +V
Sbjct: 336 YARYPVFALKSLKDRTILGSCVLIFTYFMSYYIFSNFLTSFLQVSYGLSIDMSSLTLNVF 395
Query: 561 SWSFTTSLI 535
+S TT+ I
Sbjct: 396 VFSMTTTAI 404
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 26.6 bits (56), Expect = 3.6
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +2
Query: 542 EVVKLQESTEKKVLKISQTKYEEILKISKKYIFINQVDKSFHEAVDDLNQQDFIAVSG 715
E + L ++T ++L + KY + +I+ I++ KSF+E V D Q F SG
Sbjct: 150 EAISLMQAT-LQLLNFFK-KYRSVERIASLSRSISEFQKSFYEQVFDTFQSQFKKESG 205
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 26.2 bits (55), Expect = 4.8
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = +2
Query: 509 GVLHYYDSEIREVVKLQEST 568
G+L++YD++ RE++K +T
Sbjct: 159 GILYFYDTQTRELIKFLTNT 178
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/66 (24%), Positives = 34/66 (51%)
Frame = -2
Query: 545 LLLFQNHSNEGLLISITMWNFLDII**YFGLILGHTIKSTFKDVVVFCVNL*QFSFCVEV 366
+L+ S++G+ I + NF+ +I +FG + + + +F ++++ CV + EV
Sbjct: 362 ILIISRFSSDGI-DKIDVQNFILLILKFFGFAISASDRRSFLNLIMSCVMVSIQQSSAEV 420
Query: 365 VHFECD 348
H D
Sbjct: 421 GHSTSD 426
>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
3|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 474 DVKEIPHGDANEESFITMI 530
D KE+P GD N ES I ++
Sbjct: 364 DFKEVPSGDINLESAIALV 382
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 25.4 bits (53), Expect = 8.4
Identities = 8/30 (26%), Positives = 14/30 (46%)
Frame = -3
Query: 154 EGKYWHDYNYHAVFYYRSKHLKIWQLICAP 65
E +YW ++ + R H ++W L P
Sbjct: 641 EVRYWDGKSFDLILKLRGHHSEVWALAVGP 670
>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 500
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -1
Query: 729 IFAPSPLTAIKSCWFKSSTASWKLLSTWFMKM 634
I A + + + + W + + ASW +L WF M
Sbjct: 243 ILAKATIHSKNAVWNQYTVASWVMLFMWFFYM 274
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 160 HEEGKYWHDYNYHAVFYYRSKHLK 89
+ EGK++ +YH F R KH K
Sbjct: 299 YREGKFYCHLDYHEQFSPRCKHCK 322
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,986,426
Number of Sequences: 5004
Number of extensions: 61378
Number of successful extensions: 220
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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