Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30267
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0441 - 3305319-3305894                                           29   3.8  
02_03_0205 - 16411707-16412759,16413077-16413256,16413960-164144...    29   5.0  

>01_01_0441 - 3305319-3305894
          Length = 191

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 160 HEEGKYWHDYNYHAVFYYRSKHLKIWQLICAP 65
           H+EGK W D++Y+ V  Y +  L     IC P
Sbjct: 159 HDEGKRWADHDYYNVM-YATGPLAFRPAICPP 189


>02_03_0205 -
           16411707-16412759,16413077-16413256,16413960-16414498,
           16414798-16414825
          Length = 599

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 644 NQVDKSFHEAVDDLNQQDFIAVS 712
           + + K  HEA+DDL   DF+A S
Sbjct: 407 SDLSKMVHEAIDDLEMPDFVAKS 429


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,573,634
Number of Sequences: 37544
Number of extensions: 333122
Number of successful extensions: 762
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)