Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30267
(729 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57489| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_55996| Best HMM Match : DUF1694 (HMM E-Value=6.9) 31 0.96
SB_35445| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053) 29 2.9
SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_8473| Best HMM Match : Transgly (HMM E-Value=2e-19) 28 6.7
SB_31790| Best HMM Match : Pentaxin (HMM E-Value=0.2) 28 8.9
>SB_57489| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 68
Score = 31.5 bits (68), Expect = 0.72
Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Frame = -3
Query: 556 EFHHFSY---FRIIVMKDSSLASPCGISLTSYSDIL 458
E HHF Y FR+IV ++ L +PC ++++ ++D +
Sbjct: 17 EKHHFFYVIPFRLIVFTENRLQTPCVLTISRHNDCI 52
>SB_55996| Best HMM Match : DUF1694 (HMM E-Value=6.9)
Length = 167
Score = 31.1 bits (67), Expect = 0.96
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Frame = -3
Query: 556 EFHHFSY---FRIIVMKDSSLASPCGISLTSYSD 464
E HHF Y FR+IV ++ L +PC ++++ ++D
Sbjct: 58 EKHHFFYVIPFRLIVFMENRLQTPCVLTISRHND 91
>SB_35445| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 250
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/70 (22%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Frame = +2
Query: 515 LHYYDSEIREVVKLQESTEKKVLKISQTKYEEILKISKK----YIFINQVDKSFHEAVDD 682
+ + +SE VK+ ES + +KIS+++ E +KIS+ ++ I++ + + +
Sbjct: 13 IDWVESEPETFVKISESEPETFVKISESEPETFVKISESEPETFVKISESEPETFVKISE 72
Query: 683 LNQQDFIAVS 712
+ F+ +S
Sbjct: 73 SEPETFVKIS 82
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +2
Query: 527 DSEIREVVKLQESTEKKVLKISQTKYEEILKISKK----YIFINQVDKSFHEAVDDLNQQ 694
+SE VK+ ES + +KIS+++ E +KIS+ ++ I++ + + + +
Sbjct: 50 ESEPETFVKISESEPETFVKISESEPETFVKISESEPETFVKISESEPETFVKISESEPE 109
Query: 695 DFIAVS 712
F+ +S
Sbjct: 110 TFVKIS 115
>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
Length = 1152
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/50 (22%), Positives = 27/50 (54%)
Frame = +2
Query: 530 SEIREVVKLQESTEKKVLKISQTKYEEILKISKKYIFINQVDKSFHEAVD 679
S+ R++++ S + ++ +Q KY +I K KY I++ + + ++
Sbjct: 53 SKYRDIIEKARSKYRDIIDKAQNKYRDIDKAQSKYRDIDKAQSKYRDIIE 102
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 530 SEIREVVKLQESTEKKVLKISQTKYEEILKISKKYIFINQVDKSFHEAVD--DLNQQDFI 703
S R+++ +S + ++ +Q+KY +I K KY I ++S + +D N +D I
Sbjct: 245 SNYRDIIDKAQSKYRDIIDKAQSKYRDIDKAQSKYRDIIDKEQSKYRDIDKAQSNYRDII 304
>SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1531
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Frame = +2
Query: 542 EVVKLQESTEKKVLKISQTKYEEILKISKKYIF-----INQVDKSFHEAVDDLNQQDFIA 706
E+ KLQ + + ++ E++L SK+ + + ++DK +E+VD+L Q+D
Sbjct: 932 ELTKLQNDFQDTITQLKTL--EDLLDTSKRVVEEKEQKVTELDKLLNESVDELQQKDKSL 989
Query: 707 VSGDG 721
DG
Sbjct: 990 KEKDG 994
>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2248
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +2
Query: 542 EVVKLQESTEKKVLKISQTKYEEILKISKKYIFINQVDKSFHEAVDDLNQQDFIAVSGDG 721
E+ KLQES +V + + L+ + K + SFH + + DF+ V DG
Sbjct: 2020 EIGKLQESFRSQVADVELRAHNNWLQWNSKLHCLCSNGPSFHIRLVVFDFVDFVCVLADG 2079
Query: 722 A 724
A
Sbjct: 2080 A 2080
>SB_8473| Best HMM Match : Transgly (HMM E-Value=2e-19)
Length = 318
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +3
Query: 315 KRLKPLSLLFHITLKMDNLYTKGELLQVHTKNYD 416
KR+ S + +++K++ YTK E++ ++ NYD
Sbjct: 29 KRIIQKSKEWVVSIKLERQYTKEEIIAMYLNNYD 62
>SB_31790| Best HMM Match : Pentaxin (HMM E-Value=0.2)
Length = 421
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 378 KGELLQVHTKNYDVFEGRFYSMAQDKTKISLYDVKEI 488
KG+ + N +V +GR + ++DK+ L+DVK I
Sbjct: 281 KGKTDNTNVYNLEVIDGRVHWESRDKSGKPLFDVKTI 317
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,050,880
Number of Sequences: 59808
Number of extensions: 412335
Number of successful extensions: 1025
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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