Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30267
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   5.2  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   9.0  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   9.0  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 541 SYFRIIVMKDSSLASPCG 488
           SYF+++V++D      CG
Sbjct: 186 SYFKVVVVEDVDSVECCG 203


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +3

Query: 570 KRKFSKYRKRNMKKS 614
           +RK+ KYR+R+ ++S
Sbjct: 53  ERKYRKYRERSKERS 67


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +3

Query: 570 KRKFSKYRKRNMKKS 614
           +RK+ KYR+R+ ++S
Sbjct: 53  ERKYRKYRERSKERS 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,719
Number of Sequences: 438
Number of extensions: 3817
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)