Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30267
         (729 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25110.1 68415.m03004 MIR domain-containing protein similar t...    29   4.2  
At3g51960.1 68416.m05699 bZIP family transcription factor contai...    28   5.5  
At5g62960.1 68418.m07899 expressed protein                             27   9.6  

>At2g25110.1 68415.m03004 MIR domain-containing protein similar to
           SP|Q99470 Stromal cell-derived factor 2 precursor
           (SDF-2) {Homo sapiens}; contains Pfam profile PF02815:
           MIR domain
          Length = 218

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/65 (20%), Positives = 31/65 (47%)
 Frame = +3

Query: 330 LSLLFHITLKMDNLYTKGELLQVHTKNYDVFEGRFYSMAQDKTKISLYDVKEIPHGDANE 509
           L++  +++L  D+ YT         +  ++  G    +  +KTK  L+   ++P+G  + 
Sbjct: 8   LAIFLYLSLDPDSGYTSASAAASGKEGVEITYGSAIKLMHEKTKFRLHS-HDVPYGSGSG 66

Query: 510 ESFIT 524
           +  +T
Sbjct: 67  QQSVT 71


>At3g51960.1 68416.m05699 bZIP family transcription factor contains
           Pfam profile: PF00170 bZIP transcription factor
          Length = 227

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 268 IFKAYSETEKDPKPVKKD*NHYHYCFISHSKWTTSTQKEN 387
           + +  S T     P  +D +H H CF +H+    S Q+EN
Sbjct: 51  VTRGCSHTHSCNPPGPEDASHSHTCFHAHTHLIISDQQEN 90


>At5g62960.1 68418.m07899 expressed protein
          Length = 347

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 729 IFAPSPLTAIKSCWFKSSTASWKLLSTWF 643
           + +PS  T +K  W  S+TA+    S WF
Sbjct: 8   LLSPSSYTELKDAWHPSTTANTTESSYWF 36


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,967,300
Number of Sequences: 28952
Number of extensions: 297726
Number of successful extensions: 798
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)