Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30265
         (583 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300...   188   3e-48
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419          188   3e-48
07_03_0100 + 13389899-13390219,13390723-13390841,13391220-133913...    31   0.89 
01_07_0219 + 42079095-42079399,42079584-42079728,42081695-420817...    30   1.5  
05_05_0116 - 22496535-22496576,22496974-22497058,22497468-224975...    27   8.2  

>11_04_0317 -
           16328558-16328612,16328698-16328901,16329794-16330065,
           16330152-16330220
          Length = 199

 Score =  188 bits (458), Expect = 3e-48
 Identities = 91/109 (83%), Positives = 100/109 (91%)
 Frame = +3

Query: 255 RNNGKKLMAVRIVKHAFXIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVD 434
           RNNGKK+MAVRIVKHA  IIHLLT  NP+QV+V AIINSGPRED+TRIG AG VRRQAVD
Sbjct: 76  RNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVRRQAVD 135

Query: 435 VSPLRRVNQAIWLLCTGAREAAFQNIXTIAECVADELINAAKGSSNSYA 581
           +SPLRRVNQAI+LL TGARE+AF+NI TIAEC+ADELINAAKGSSNSYA
Sbjct: 136 ISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYA 184



 Score =  107 bits (256), Expect = 8e-24
 Identities = 50/71 (70%), Positives = 58/71 (81%), Gaps = 1/71 (1%)
 Frame = +1

Query: 61  EIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTN 237
           E+KLF RWS  DVQV+D+SL DY++V   K+A YLPH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 10  EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTN 69

Query: 238 SLMMHGGTMAK 270
           SLMMHG    K
Sbjct: 70  SLMMHGRNNGK 80


>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
          Length = 200

 Score =  188 bits (458), Expect = 3e-48
 Identities = 91/109 (83%), Positives = 100/109 (91%)
 Frame = +3

Query: 255 RNNGKKLMAVRIVKHAFXIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVD 434
           RNNGKK+MAVRIVKHA  IIHLLT  NP+QV+V AIINSGPRED+TRIG AG VRRQAVD
Sbjct: 77  RNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVRRQAVD 136

Query: 435 VSPLRRVNQAIWLLCTGAREAAFQNIXTIAECVADELINAAKGSSNSYA 581
           +SPLRRVNQAI+LL TGARE+AF+NI TIAEC+ADELINAAKGSSNSYA
Sbjct: 137 ISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYA 185



 Score =  101 bits (242), Expect = 4e-22
 Identities = 47/70 (67%), Positives = 56/70 (80%), Gaps = 1/70 (1%)
 Frame = +1

Query: 64  IKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNS 240
           +KLF  WS  DVQV+D+SL DY++V   K+A YLPH+AGRY+ KRFRKAQCP+VERLTNS
Sbjct: 12  VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNS 71

Query: 241 LMMHGGTMAK 270
           LMMHG    K
Sbjct: 72  LMMHGRNNGK 81


>07_03_0100 +
           13389899-13390219,13390723-13390841,13391220-13391315,
           13391481-13391553,13392055-13392123
          Length = 225

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 502 NAASRAPVHKSQIAWLTRRKGETSTA*RRTVPARPILVESSRGPE 368
           +A+SR P  + +I    RR+G + +  RR+ P +P     +R PE
Sbjct: 50  HASSRVPAARHRIVCPCRRRGGSPSLTRRSSPEKPGPFSQTRSPE 94


>01_07_0219 +
           42079095-42079399,42079584-42079728,42081695-42081739,
           42082150-42082265,42082913-42083012,42083103-42083138,
           42083301-42083351,42083431-42083565
          Length = 310

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +3

Query: 417 RRQAVDVSPLRRVNQAIWLLCTGAREAAFQNIXTIAECVADELINAAKGSSNS 575
           RR+AV  + +RR+  A WL   GAR A  +         A E++ +A G   S
Sbjct: 9   RREAVRAAHVRRIEAAAWL---GARRATRREDAAARCAAAGEVVGSAAGVGRS 58


>05_05_0116 -
           22496535-22496576,22496974-22497058,22497468-22497545,
           22497656-22497803,22498612-22498771,22499056-22499058
          Length = 171

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -2

Query: 150 VLLFNGNVVLQRHIRDLHIVATPSAEK 70
           +++F+G++V+ + I+DLH   T   E+
Sbjct: 57  IVMFDGHIVVYKFIQDLHFFVTGGEEE 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,606,285
Number of Sequences: 37544
Number of extensions: 339440
Number of successful extensions: 753
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)