Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30265
         (583 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)               207   4e-54
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    29   3.7  
SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)           28   4.8  
SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14)                 28   4.8  
SB_35802| Best HMM Match : Laminin_EGF (HMM E-Value=0.25)              27   8.5  

>SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)
          Length = 272

 Score =  207 bits (506), Expect = 4e-54
 Identities = 99/109 (90%), Positives = 105/109 (96%)
 Frame = +3

Query: 255 RNNGKKLMAVRIVKHAFXIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVD 434
           RNNGKKLM VRI+KH+F IIHLLTGENPLQVLV AIINSGPREDSTRIGRAGTVRRQAVD
Sbjct: 149 RNNGKKLMTVRIIKHSFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVD 208

Query: 435 VSPLRRVNQAIWLLCTGAREAAFQNIXTIAECVADELINAAKGSSNSYA 581
           VSPLRRVNQAIWLLCTGARE+AF+NI +IAEC+ADELINAAKGSSNSYA
Sbjct: 209 VSPLRRVNQAIWLLCTGARESAFRNIKSIAECLADELINAAKGSSNSYA 257



 Score =  125 bits (302), Expect = 2e-29
 Identities = 57/85 (67%), Positives = 69/85 (81%)
 Frame = +1

Query: 16  VVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKR 195
           VV +  +   A ++P+IKLFG+WS  DVQVSD+SL DYI+VKEKY+ YLPH+AGRYA KR
Sbjct: 69  VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISLTDYIAVKEKYSTYLPHTAGRYAAKR 128

Query: 196 FRKAQCPIVERLTNSLMMHGGTMAK 270
           FRKAQCPIVER+TNS+MMHG    K
Sbjct: 129 FRKAQCPIVERITNSMMMHGRNNGK 153



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 19/35 (54%), Positives = 26/35 (74%)
 Frame = +1

Query: 16  VVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSL 120
           VV +  +   A ++P+IKLFG+WS  DVQVSD+SL
Sbjct: 6   VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISL 40


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 554  CIN*FICNTLCDCXNILKCSLTCTC 480
            C+N  +C+    C  +   SLTCTC
Sbjct: 2164 CVNETVCDGNATCARVKGTSLTCTC 2188


>SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)
          Length = 328

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = -3

Query: 536 CNTLCDCXNILKCSLTCTCAQKPDCLVDSA 447
           C   C C     C   CTC Q   C+V SA
Sbjct: 226 CCVTCRCSVCTCCPCDCTCLQCAPCIVFSA 255


>SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14)
          Length = 556

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 55  IPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 186
           IPE  L     C DV   +  LQ+++ + +KY  YL + A +Y+
Sbjct: 511 IPEEAL--NLECPDVDFRESVLQEFLLLDKKYESYLEYLALKYS 552


>SB_35802| Best HMM Match : Laminin_EGF (HMM E-Value=0.25)
          Length = 781

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
 Frame = -3

Query: 536 CNTLCDCXNI-LKCSLTCTCAQKPDC 462
           C   C C N  L CS  C+C    DC
Sbjct: 732 CQRNCSCSNNGLSCSKACSCMAGTDC 757


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,375,943
Number of Sequences: 59808
Number of extensions: 404970
Number of successful extensions: 1032
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)