Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30265
         (583 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.8  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   5.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   6.7  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   8.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/28 (32%), Positives = 10/28 (35%)
 Frame = -3

Query: 536 CNTLCDCXNILKCSLTCTCAQKPDCLVD 453
           C  LC C +   C    TC     C  D
Sbjct: 743 CFALCHCCDFDACDCEMTCPAGCKCYND 770


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 118 ETYQRLAHRSNSICRKA*FQECRRLVVKTWFP 23
           + Y+RL H  N I ++  F    RL   T+ P
Sbjct: 240 QVYRRLVHAVNEIEKRLLFSHNDRLGFLTFCP 271


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -3

Query: 239 EFVRRSTIGHWALRKRLCAYLPAE 168
           EF R  T    AL K+LC   PAE
Sbjct: 585 EFPRSITRNATALIKKLCRDNPAE 608


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -3

Query: 248 IIREFVRRSTIGHWAL 201
           +++E +R+   GHW +
Sbjct: 66  LMKERIRQKAAGHWVI 81


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -3

Query: 248 IIREFVRRSTIGHWAL 201
           +++E +R+   GHW +
Sbjct: 66  LMKERIRQKAAGHWVI 81


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -3

Query: 248 IIREFVRRSTIGHWAL 201
           +++E +R+   GHW +
Sbjct: 66  LMKERIRQKAAGHWVI 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,446
Number of Sequences: 438
Number of extensions: 3122
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)