Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30265
         (583 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identi...   186   7e-48
At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila...   186   1e-47
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila...   186   1e-47
At4g39450.1 68417.m05582 expressed protein                             28   4.0  
At5g01940.1 68418.m00113 eukaryotic translation initiation facto...    27   6.9  
At4g39955.1 68417.m05659 hydrolase, alpha/beta fold family prote...    27   6.9  
At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOA...    27   6.9  

>At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identical
           to GP:3043428
          Length = 207

 Score =  186 bits (454), Expect = 7e-48
 Identities = 90/109 (82%), Positives = 100/109 (91%)
 Frame = +3

Query: 255 RNNGKKLMAVRIVKHAFXIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVD 434
           RNNGKKLMAVRIVKHA  IIHLL+  NP+QV++ AI+NSGPRED+TRIG AG VRRQAVD
Sbjct: 84  RNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVD 143

Query: 435 VSPLRRVNQAIWLLCTGAREAAFQNIXTIAECVADELINAAKGSSNSYA 581
           +SPLRRVNQAI+LL TGAREAAF+NI TIAEC+ADELINAAKGSSNSYA
Sbjct: 144 ISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYA 192



 Score =  102 bits (244), Expect = 2e-22
 Identities = 48/71 (67%), Positives = 57/71 (80%), Gaps = 1/71 (1%)
 Frame = +1

Query: 61  EIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSAGRYAHKRFRKAQCPIVERLTN 237
           E+KLF RWS  DV V+D+SL DYI V+  K+A ++PH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 18  EVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTN 77

Query: 238 SLMMHGGTMAK 270
           SLMMHG    K
Sbjct: 78  SLMMHGRNNGK 88


>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score =  186 bits (452), Expect = 1e-47
 Identities = 89/109 (81%), Positives = 100/109 (91%)
 Frame = +3

Query: 255 RNNGKKLMAVRIVKHAFXIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVD 434
           RNNGKKLMAVRIVKHA  IIHLL+  NP+QV++ AI+NSGPRED+TRIG AG VRRQAVD
Sbjct: 84  RNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVD 143

Query: 435 VSPLRRVNQAIWLLCTGAREAAFQNIXTIAECVADELINAAKGSSNSYA 581
           +SPLRRVNQAI+L+ TGAREAAF+NI TIAEC+ADELINAAKGSSNSYA
Sbjct: 144 ISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYA 192



 Score =  100 bits (240), Expect = 6e-22
 Identities = 49/77 (63%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
 Frame = +1

Query: 43  QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPI 219
           Q A   E+KLF RW+  DV V+D+SL DYI V+  K+A ++PH+AGRY+ KRFRKAQCPI
Sbjct: 12  QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPI 71

Query: 220 VERLTNSLMMHGGTMAK 270
           VERLTNSLMMHG    K
Sbjct: 72  VERLTNSLMMHGRNNGK 88


>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score =  186 bits (452), Expect = 1e-47
 Identities = 89/109 (81%), Positives = 100/109 (91%)
 Frame = +3

Query: 255 RNNGKKLMAVRIVKHAFXIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVD 434
           RNNGKKLMAVRIVKHA  IIHLL+  NP+QV++ AI+NSGPRED+TRIG AG VRRQAVD
Sbjct: 84  RNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVD 143

Query: 435 VSPLRRVNQAIWLLCTGAREAAFQNIXTIAECVADELINAAKGSSNSYA 581
           +SPLRRVNQAI+L+ TGAREAAF+NI TIAEC+ADELINAAKGSSNSYA
Sbjct: 144 ISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYA 192



 Score =  100 bits (240), Expect = 6e-22
 Identities = 49/77 (63%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
 Frame = +1

Query: 43  QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPI 219
           Q A   E+KLF RW+  DV V+D+SL DYI V+  K+A ++PH+AGRY+ KRFRKAQCPI
Sbjct: 12  QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPI 71

Query: 220 VERLTNSLMMHGGTMAK 270
           VERLTNSLMMHG    K
Sbjct: 72  VERLTNSLMMHGRNNGK 88


>At4g39450.1 68417.m05582 expressed protein
          Length = 1553

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 21/48 (43%), Positives = 26/48 (54%)
 Frame = +3

Query: 432 DVSPLRRVNQAIWLLCTGAREAAFQNIXTIAECVADELINAAKGSSNS 575
           DVSPL  +   IWL  T ARE +   +  I   +A E I AA  S+NS
Sbjct: 411 DVSPLSCLT--IWLEITAARETSSIKVNDITTKIA-ENIGAAVVSTNS 455


>At5g01940.1 68418.m00113 eukaryotic translation initiation factor
           2B family protein / eIF-2B family protein similar to
           SP|P41035 Eukaryotic translation initiation factor 2
           subunit (eIF-2-beta) {Oryctolagus cuniculus}; contains
           Pfam profile PF01873: Domain found in IF2B/IF5
          Length = 231

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 77  ADGVATMCKSLICLCRTTFPLKRSTQNIYLIQLAGMHTSVSV 202
           A+G  T+C +   LCRT   + R   ++    LA M T VS+
Sbjct: 109 AEGTITVCLNFADLCRT---MHRKPDHVMKFLLAQMETKVSL 147


>At4g39955.1 68417.m05659 hydrolase, alpha/beta fold family protein
           low similarity to SP|P24640|LIP3_MORSP Lipase 3
           precursor (EC 3.1.1.3) (Triacylglycerol lipase)
           {Moraxella sp}; contains Pfam profile PF00561:
           hydrolase, alpha/beta fold family
          Length = 328

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 38  YHKPPTFLKSSFSADGVATMCKSLI 112
           ++KPP ++ S F+ D +  MCK  +
Sbjct: 191 FYKPPIWIPSCFAMDYIHVMCKDYL 215


>At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOAT)
           family protein low similarity to skinny hedgehog
           [Drosophila melanogaster] GI:15420842; contains Pfam
           profile PF03062: MBOAT family
          Length = 533

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 14  AWLWKPCLYHKPPTFLKSSFSA 79
           +W W  CL+  P   LKS+ SA
Sbjct: 426 SWAWLTCLFFMPEMLLKSASSA 447


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,030,475
Number of Sequences: 28952
Number of extensions: 264356
Number of successful extensions: 581
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)