Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30264
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc...    28   1.2  
SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces pomb...    28   1.6  
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    27   2.9  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    27   2.9  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    26   5.0  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   5.0  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    26   6.6  
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy...    25   8.7  

>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
           oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +3

Query: 15  IAKFGGDPNKITILGESSGSGAVTHHLLSPMSKDLF-HGAIAQSGVCLQEWAIADGAKER 191
           +A+F    +K+ ++G  S   +V H + +  SK  F +     + +   E  I DGAK  
Sbjct: 21  LARFASTHHKVLVVGGGSAGISVAHQIYNKFSKYRFANDQGKDTSLKPGEIGIVDGAKYH 80

Query: 192 AFRVGKVL 215
            ++ G  L
Sbjct: 81  YYQPGWTL 88


>SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 316

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 42  KITILGESSGSGAVTHHLLSPMSKDLFHGAIAQSGVCLQEWAIADGAKER 191
           KI ++G S+GS  V ++L   +  +     IAQ+ V  +E A     KE+
Sbjct: 111 KIVLMGHSTGSQNVLYYLTQSILPNYLIAGIAQAPVSDREAAYQFNGKEK 160


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 501 RNKNPQPSYLVPREIAKVVSQRKLEEFGARIKKYYFGNKEISNETAEAI 647
           + ++P+  Y   R  + +  +   +  G  IKKYY  +  + NE  E I
Sbjct: 52  KQRDPRLVYRSLRTTSNICHRLNADVLGQLIKKYYSFDNSLKNELLELI 100


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 208 KF*EKIQRIQMSCLNFEKCASYFISKHDFHDT 303
           +F  K Q +   CLN+EK   YF     FH++
Sbjct: 106 EFQSKRQCLNKGCLNYEKNYDYFKKLKAFHES 137


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
            Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 99   SPMSKDLFHGAIAQSGVCLQEWAIAD 176
            SP+  D F     Q G+C Q+W   D
Sbjct: 948  SPIIGDKFSSRHGQKGICSQKWPTVD 973


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 417  DIKTSNGFLVKNASTFWNFFSI 352
            D+K +NG L KNAS F +F  I
Sbjct: 1193 DLKDTNGVLEKNASDFIDFQGI 1214


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 126 GAIAQSGVCLQEWAIADGAKERAFRVGKVLGKDTKDTNELL 248
           GAI ++   LQ +   D  KE+   V  +L  + K  NEL+
Sbjct: 93  GAICEAIYVLQNFESTDFNKEKERLVSIILESNNKSNNELI 133


>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 494 SNISFSNKRLRQTYDQSSRAPYSLYQILKHPMDF*LKMLQH 372
           S I FS+ R    +D+ SRA     +  K+P  F  + L H
Sbjct: 123 SEIPFSDTRFHDEFDRESRACLHRSEFPKNPHAFLAQDLPH 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,023,254
Number of Sequences: 5004
Number of extensions: 60994
Number of successful extensions: 174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)