Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30263
         (687 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    25   0.77 
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    25   0.77 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   3.1  

>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +3

Query: 381 YPRTRRAMRLLQLXAPTQILVQMRKLVPXR-RRRWLWAVFTQXTLAFTYLVN 533
           YP       +  L   T+++  ++     R ++RW   ++    L F YLVN
Sbjct: 89  YPTPYGGRLVWTLPGKTKMIAHLKDKKKIRAKKRWSQCMYMYFLLGFRYLVN 140


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +3

Query: 381 YPRTRRAMRLLQLXAPTQILVQMRKLVPXR-RRRWLWAVFTQXTLAFTYLVN 533
           YP       +  L   T+++  ++     R ++RW   ++    L F YLVN
Sbjct: 403 YPTPYGGRLVWTLPGKTKMIAHLKDKKKIRAKKRWSQCMYMYFLLGFRYLVN 454


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 634 EDVLSDSKRRMCNMPRGV 687
           E  LSDS++ +CN  +G+
Sbjct: 294 EPELSDSEKTLCNGSKGI 311


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,970
Number of Sequences: 336
Number of extensions: 2891
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)