Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30263
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    27   1.9  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    27   3.4  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   5.9  
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy...    25   7.8  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    25   7.8  

>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 592 HLVMCLTRPRLSYNEDVLS 648
           H +  LT PR S+NED+LS
Sbjct: 727 HPIQTLTAPRQSFNEDLLS 745


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 304 LNPWDGSQQAKAFRARHTSDPE 239
           +NPWD S+ A+AFR   T   E
Sbjct: 600 VNPWDYSKTAEAFRTALTMSEE 621


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
 Frame = +3

Query: 198  NGGQSPRARTFSTSSGSDVCRAR--KALACCEPSQGF---KC----RMXGSALGLCLQYR 350
            NGG+    R F+ S+ S+VC AR  + +     ++ F    C    +M  S      Q R
Sbjct: 969  NGGKYITWRLFAVSAHSNVCAARIYEHMGQAREAEFFYRQACSISEKMPFSCFSATFQLR 1028

Query: 351  TCTLLTK 371
             C+LLT+
Sbjct: 1029 LCSLLTR 1035


>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 354

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 179 THNDSVTQIANMSCTETEDHENSRDSADA 93
           +H +  +Q + +   E EDHEN++  A A
Sbjct: 310 SHGNKTSQKSTIKNIENEDHENTKSPAVA 338


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 248 RPGASRECPCARTLPPVRSARLCTHNDSVTQIANMSCT 135
           RP   R+  C R+ P VR+ +LC   +   +IA +S T
Sbjct: 17  RPKKCRQ-ECRRSCPVVRTGKLCIEVNPTDRIAFISET 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,827
Number of Sequences: 5004
Number of extensions: 45952
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)