Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30263
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998... 31 0.86
03_06_0479 + 34217170-34217172,34217337-34217786 31 1.1
11_04_0359 + 16735204-16735676,16736597-16736647,16736860-167369... 29 3.5
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69... 29 4.6
02_05_0933 + 32846658-32846729,32847038-32847133,32847243-328474... 29 4.6
05_03_0039 - 7621613-7622695 28 6.0
12_02_0142 - 14306325-14306490,14306584-14306687,14306788-143069... 28 8.0
07_03_0712 - 20878272-20879633 28 8.0
03_02_0105 - 5648436-5648536,5648650-5648692,5649152-5649244,564... 28 8.0
>07_03_0965 -
22996575-22999112,22999202-22999636,22999717-22999801,
22999888-22999957,23000050-23000293,23000396-23000482,
23000655-23000706,23000830-23001226,23001324-23001648,
23001748-23001914,23002007-23002547
Length = 1646
Score = 31.1 bits (67), Expect = 0.86
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -2
Query: 269 LPRPTHVRPGASRECPCARTLPPVRSARLCTH 174
L P V+PG+S A LPPVR R TH
Sbjct: 641 LHHPMDVKPGSSAGLQHAALLPPVRPKRCATH 672
>03_06_0479 + 34217170-34217172,34217337-34217786
Length = 150
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +3
Query: 180 AKASTANGGQSPRARTFSTSSGSDVCRARKALACCEPSQGFKCRMXGSALGL 335
A A+ GG++PR++ F S R + ++GFK + G + L
Sbjct: 81 ATAAAGEGGEAPRSKIFFVSWSPAAADVRSKMVYASSNEGFKKELDGVQIDL 132
>11_04_0359 +
16735204-16735676,16736597-16736647,16736860-16736934,
16737011-16737062,16737147-16737280,16737397-16737511,
16737665-16737751,16737855-16737903,16738351-16738435,
16738641-16738715,16738848-16739029,16739905-16739969
Length = 480
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 184 FAPITTPLRKSRICHALKLKITRTRAIRPTHR 89
F+PIT P +R C + L ++R RPT R
Sbjct: 123 FSPITVPAAATRHCRSAALLLSRLPTGRPTFR 154
>03_01_0085 +
690618-691012,691114-691193,691775-691959,692363-693320,
693391-693518,693951-694010,694113-694163,694704-694821,
694990-695915,695916-697707,697810-697943,698029-698526
Length = 1774
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +2
Query: 188 EHCERGAESSRKDILD*LRVGRV-SGAEGFSLLRAIPGIQVSNXRQRARSLSSVPDLHA- 361
E C+R +S + D++ L+VG + A+ F +R ++ +RAR ++ V D+H
Sbjct: 583 EECKRLRQSMKYDLISRLKVGDIQEKAKIFQFVRV--NDLLNTPEERARRINEVLDVHVD 640
Query: 362 SH 367
SH
Sbjct: 641 SH 642
>02_05_0933 +
32846658-32846729,32847038-32847133,32847243-32847411,
32847608-32847669,32848364-32849320,32850036-32850119,
32850307-32850595,32850645-32850694
Length = 592
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -2
Query: 188 RLCTHNDSVTQIANMSCTETE--DHENSRDSADAPAERIVRSTET 60
RLCT NDS+ +N S + D N+ A+ A++ STET
Sbjct: 136 RLCTLNDSIVLPSNCSAVHDQQLDKLNTEQGANIIAQQDNASTET 180
>05_03_0039 - 7621613-7622695
Length = 360
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 497 KHGPEPATPPXRHQFPHL 444
K GP+P PP +H+ PH+
Sbjct: 337 KPGPKPIAPPNKHKPPHM 354
>12_02_0142 -
14306325-14306490,14306584-14306687,14306788-14306967,
14307155-14307253,14307346-14307535,14307722-14307748,
14308190-14308506,14308532-14308675,14308799-14308905,
14309085-14309357,14309470-14309827
Length = 654
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -3
Query: 268 FRARHTSDPELVENVLARGLCPPFAVLAFAPIT 170
F A H+ ELV ARGL F L P+T
Sbjct: 61 FLAIHSRGEELVSKFSARGLVEEFVCLGIQPLT 93
>07_03_0712 - 20878272-20879633
Length = 453
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +3
Query: 198 NGGQSPRARTFSTSSGSDVCRARKALACCEPSQGFKCR 311
N SP R SS ++C A LA P G CR
Sbjct: 136 NPSSSPTFRVLPCSSALNLCAAEARLAGATPPPGCACR 173
>03_02_0105 -
5648436-5648536,5648650-5648692,5649152-5649244,
5649424-5649553,5649631-5649747,5650667-5650715,
5651139-5651229,5651381-5651473,5651565-5651611,
5651719-5651779,5651973-5652051,5652184-5652284,
5652409-5652476,5652593-5652650
Length = 376
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +1
Query: 514 PSHIWSINGIKCPVXSKFVLPDDIECH 594
PSHI +N C V S F LPD +E H
Sbjct: 102 PSHIVLLN---CDVCSSFPLPDMLEAH 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,707,926
Number of Sequences: 37544
Number of extensions: 362292
Number of successful extensions: 1146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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