Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30263
(687 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21610| Best HMM Match : HSF_DNA-bind (HMM E-Value=0.32) 31 1.2
SB_45285| Best HMM Match : AT_hook (HMM E-Value=0.13) 30 1.5
SB_47583| Best HMM Match : SAP (HMM E-Value=8.9e-08) 29 3.5
SB_32949| Best HMM Match : SAP (HMM E-Value=1) 29 3.5
SB_42611| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_38239| Best HMM Match : YopE (HMM E-Value=7.2) 29 4.7
SB_27352| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041) 29 4.7
SB_27137| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_9476| Best HMM Match : RuvB_N (HMM E-Value=0.35) 28 6.2
SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_44069| Best HMM Match : Rad21_Rec8 (HMM E-Value=0.0016) 28 8.1
>SB_21610| Best HMM Match : HSF_DNA-bind (HMM E-Value=0.32)
Length = 425
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +1
Query: 529 SINGIKCPVXSKFVLPDDIECHLVMCL 609
S GIKCPV + D IE HLV C+
Sbjct: 397 SYGGIKCPVCDEIFPHDQIEEHLVDCV 423
>SB_45285| Best HMM Match : AT_hook (HMM E-Value=0.13)
Length = 440
Score = 30.3 bits (65), Expect = 1.5
Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 1/137 (0%)
Frame = -2
Query: 503 LRKHGPEPATPPXRHQFPHLN*NLCRXXQLQKPHSSASSGVWLLLREKRAGPVLKTETER 324
L H ++ Q P L +L KP +SAS G +L +K++ V TE
Sbjct: 155 LSHHEQNKSSSSLTKQSPGLVRSLKGKRLAHKPSASASPGTKVLQTKKKSALV----TEP 210
Query: 323 AAXHSTLESLGWLATS*SLPRPTHVRPGASRECPCARTLPPVRSARLCTHNDSVTQI-AN 147
+ S LE+ AT S+ H S + TLP + +R H TQ+ N
Sbjct: 211 DSQESDLEA---TATVSSINTEPHKTSKHSNKQDFKETLPDLAISRKEKHEKKATQMELN 267
Query: 146 MSCTETEDHENSRDSAD 96
+ + ++ ++ D +D
Sbjct: 268 VIPEDKQESDDDSDISD 284
>SB_47583| Best HMM Match : SAP (HMM E-Value=8.9e-08)
Length = 407
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 544 KCPVXSKFVLPDDIECHLVMCLTR 615
+CPV + +L + HL +CLTR
Sbjct: 64 ECPVCGELILQSKVNSHLDLCLTR 87
>SB_32949| Best HMM Match : SAP (HMM E-Value=1)
Length = 269
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 544 KCPVXSKFVLPDDIECHLVMCLTR 615
+CPV + +L + HL +CLTR
Sbjct: 142 ECPVCGELILQSKVNSHLDLCLTR 165
>SB_42611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 684
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 169 TPLRKSRICHALKLKITRTRAIRP 98
TP S I HALK T+T A+RP
Sbjct: 455 TPYSNSHIHHALKQYATKTNALRP 478
>SB_38239| Best HMM Match : YopE (HMM E-Value=7.2)
Length = 247
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 169 TPLRKSRICHALKLKITRTRAIRP 98
TP S I HALK T+T A+RP
Sbjct: 18 TPYSNSHIHHALKQYATKTNALRP 41
>SB_27352| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 169 TPLRKSRICHALKLKITRTRAIRP 98
TP S I HALK T+T A+RP
Sbjct: 18 TPYSNSHIHHALKQYATKTNALRP 41
>SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 169 TPLRKSRICHALKLKITRTRAIRP 98
TP S I HALK T+T A+RP
Sbjct: 428 TPYSNSHIHHALKQYATKTNALRP 451
>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
Length = 942
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +3
Query: 264 RKALACCEPSQGFKCRMXGSA---LGLCLQYRTCTLLTKQ*PYPRTRRAMR 407
RK+ C + QG C M A LC +TC + TK P PR + +R
Sbjct: 308 RKSKKCYQSCQGGHCTMKCKAPRCYNLC-DSKTCIIPTKAPPLPRECKTLR 357
>SB_27137| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +3
Query: 204 GQSPRARTFSTSSGSDVCRARKALACCEP--SQGFKCRMXGSALGLCLQYRTCTLLTKQ* 377
G+S RA + C AR+ L+ P SQ +C+ SA CLQ++ T K
Sbjct: 8 GRSVRASSLLRQLAKGGCAARR-LSWVTPGFSQSRRCKTTASAKLACLQHKAFTEAVKNQ 66
Query: 378 PYPRTRRAMRL 410
P T + R+
Sbjct: 67 NSPSTDISERI 77
>SB_9476| Best HMM Match : RuvB_N (HMM E-Value=0.35)
Length = 848
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +1
Query: 544 KCPVXSKFVLPDDIECHLVMCLTRPRLSYNEDVLSDSK 657
+CPV K P I H+ CL E L DSK
Sbjct: 148 ECPVCGKSFSPKQINSHVEDCLKATENGEEERTLQDSK 185
>SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1266
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +2
Query: 176 GCKGEHCERGAESSRKDILD*LRVGRVSGAEGFSLL-RAIPGIQVSNXRQRARSLSSVPD 352
G K + E+G +S + + + R+SG S RA Q+S S+SS+P
Sbjct: 239 GNKSQISEKGRQSGKSQLS---KQSRLSGKSQMSKKSRASRTSQISRQSSVVESVSSIPT 295
Query: 353 LHASHEAI 376
+ + HE++
Sbjct: 296 IASVHESV 303
>SB_44069| Best HMM Match : Rad21_Rec8 (HMM E-Value=0.0016)
Length = 800
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 260 GAEGFSLLRAIPGIQVSNXRQRARSLSSVPDLHAS 364
G G LLRA PG + S+ +++ L PD+ S
Sbjct: 645 GISGIELLRAQPGEEASSLFEQSSRLDVTPDVQPS 679
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,479,460
Number of Sequences: 59808
Number of extensions: 406202
Number of successful extensions: 1384
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1384
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -