Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30263
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-2|AAF35997.2|  189|Caenorhabditis elegans Hypothetical ...    59   3e-09
U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AL132902-13|CAL64008.1|  913|Caenorhabditis elegans Hypothetical...    28   7.2  

>AC024200-2|AAF35997.2|  189|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.10 protein.
          Length = 189

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 24/39 (61%), Positives = 30/39 (76%)
 Frame = +1

Query: 541 IKCPVXSKFVLPDDIECHLVMCLTRPRLSYNEDVLSDSK 657
           +KCPV  K V  DD + HLVMCLTRP+++YN+DVL D K
Sbjct: 104 MKCPVCHKVVPSDDADIHLVMCLTRPKITYNDDVLKDDK 142


>U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical
           protein C01G5.4 protein.
          Length = 1079

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = -3

Query: 625 IDVASSGTLRDGTRCRPVKRTCXTPDILYHLLTKYVKARVXCVNTAQSQRRRRSG 461
           I+V+   TL D +   P+K     PD++ ++L K    +    +  +++RR+RSG
Sbjct: 796 INVSKLKTLDDYSA--PLKELGAIPDVIMNVLGKVAVLKTLIRSIPRTERRKRSG 848


>AL132902-13|CAL64008.1|  913|Caenorhabditis elegans Hypothetical
            protein Y71A12B.17 protein.
          Length = 913

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 483  LWAVFTQXTLAFTYLVNKWYKMSGVQQVRFTGRHRVPSRNVPDEATSIL 629
            LWA+ T   LA     N W      + ++F G  RV S  V +   S+L
Sbjct: 861  LWALLTLQILAGRSKENVWTIRGQPEMLKFIGNPRVASEAVRNATESLL 909


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,470,877
Number of Sequences: 27780
Number of extensions: 283348
Number of successful extensions: 838
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)