Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30263
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   0.89 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   6.3  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 682 LEAYYTFAFSSRSEHPHYKIDVASSGT 602
           +  +Y FA+ SRSE  +Y  +V S+GT
Sbjct: 438 INVFYWFAYLSRSERINY-YNVNSNGT 463


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 7/29 (24%), Positives = 14/29 (48%)
 Frame = +1

Query: 508 PLPSHIWSINGIKCPVXSKFVLPDDIECH 594
           P P   W+++G   P   +F++   +  H
Sbjct: 449 PTPQVTWALDGFALPTNGRFMIGQYVTVH 477


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 7/29 (24%), Positives = 14/29 (48%)
 Frame = +1

Query: 508 PLPSHIWSINGIKCPVXSKFVLPDDIECH 594
           P P   W+++G   P   +F++   +  H
Sbjct: 449 PTPQVTWALDGFALPTNGRFMIGQYVTVH 477


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 256 HTSDPELVENVLARGLCP 203
           H S   L+   LA GLCP
Sbjct: 520 HASSAPLLAATLAGGLCP 537


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 182 KGEHCERGAE 211
           K EHCE+G E
Sbjct: 779 KSEHCEKGKE 788


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,072
Number of Sequences: 438
Number of extensions: 3973
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)