Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30263
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23920.1 68416.m03005 beta-amylase, putative / 1,4-alpha-D-gl...    29   2.9  
At1g11100.1 68414.m01271 SNF2 domain-containing protein / helica...    29   3.8  
At3g57290.1 68416.m06377 eukaryotic translation initiation facto...    27   8.8  
At1g58050.1 68414.m06579 helicase domain-containing protein cont...    27   8.8  

>At3g23920.1 68416.m03005 beta-amylase, putative /
           1,4-alpha-D-glucan maltohydrolase, putative similar to
           beta-amylase enzyme [Arabidopsis thaliana] GI:6065749,
           beta-amylase PCT-BMYI from [Solanum tuberosum]; contains
           Pfam profile PF01373: Glycosyl hydrolase family 14
          Length = 575

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -2

Query: 155 IANMSCTETEDHENSRDSADAPAERIVRSTETIARLIKLALEIP 24
           I N +C E  DHE  +D+  AP E++V        L  LA E+P
Sbjct: 435 IFNFTCIEMRDHEQPQDALCAP-EKLVNQ----VALATLAAEVP 473


>At1g11100.1 68414.m01271 SNF2 domain-containing protein / helicase
            domain-containing protein / zinc finger protein-related
            similar to RUSH-1alpha [Oryctolagus cuniculus]
            GI:1655930; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain
          Length = 1226

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +3

Query: 492  VFTQXTLAFTYLVNKWYKMSGVQQVRFTGRHRVPSRN 602
            VFTQ T     L+    K SG+Q  RF G+  VP+R+
Sbjct: 1076 VFTQWTKMLD-LLEAGLKSSGIQYRRFDGKMTVPARD 1111


>At3g57290.1 68416.m06377 eukaryotic translation initiation factor
           3E / eIF3e (TIF3E1) identical to eukaryotic initiation
           factor 3E subunit [Arabidopsis thaliana]
           gi|12407658|gb|AAG53613
          Length = 441

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 149 NMSCTETEDHENSRDSADAPAERIVRSTETIARLIKL 39
           NM     + H++   + DAP E + R TE +ARL  L
Sbjct: 53  NMVDYAMDIHKSLYHTEDAPQEMVERRTEVVARLKSL 89


>At1g58050.1 68414.m06579 helicase domain-containing protein contains
            similarity to SP|P24785 Dosage compensation regulator
            (Male-less protein) (No action potential protein)
            {Drosophila melanogaster}; contains Pfam profiles
            PF04408: Helicase associated domain (HA2), PF00271:
            Helicase conserved C-terminal domain
          Length = 1417

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 256  HTSDPELVENVLARGLCPPFAVLAFAPITTPLRKSR 149
            ++ +PE+V+ +L  GLCP  A      +T P  +++
Sbjct: 1247 YSQEPEVVKAILCAGLCPNIAEGLVNRLTKPAEETQ 1282


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,613,893
Number of Sequences: 28952
Number of extensions: 260854
Number of successful extensions: 713
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)