Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30262
         (670 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    25   0.74 
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    24   0.98 
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          24   0.98 
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    24   1.3  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    24   1.3  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   1.7  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   5.2  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   6.9  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   9.1  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 24.6 bits (51), Expect = 0.74
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = -2

Query: 558 NSGSLNWEPSSSSFP----CPLPVTWGRRNMFSPSIVL*HIPFLHPVPSYY 418
           N+G   W   SS F     C  P+ +GR+   +   +  ++P L  +PS Y
Sbjct: 406 NAGMWMWLSCSSFFQQFFHCYCPIKFGRKADPNGDYIRKYLPVLKNMPSQY 456


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 521 DDDDGSQFNDPELGFARVYN 580
           D +   QFNDP+  F   YN
Sbjct: 199 DTESSYQFNDPQFNFNYQYN 218


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 521 DDDDGSQFNDPELGFARVYN 580
           D +   QFNDP+  F   YN
Sbjct: 219 DTESSYQFNDPQFNFNYQYN 238


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 163 TQIEGLMCVYYDC*FGFFY 107
           +Q  G+ C  Y C FG+ Y
Sbjct: 248 SQFVGIFCSLYFCIFGYIY 266


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 163 TQIEGLMCVYYDC*FGFFY 107
           +Q  G+ C  Y C FG+ Y
Sbjct: 73  SQFVGIFCSLYFCIFGYIY 91


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 466 GRRKHVAPTPSDWERAGE 519
           G+ KH  PTPSD  +A E
Sbjct: 312 GKLKHGGPTPSDATKALE 329


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +1

Query: 211 ELHYWSYSKDPDLK*YSICHSEIASKQWKNFS 306
           E  Y + +  P     S CH   +S  W N+S
Sbjct: 120 EYKYSAAAPGPSDPSVSSCHQGFSSSTWCNYS 151


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -2

Query: 621 TLEKKCKCRKNLS*L*TRANPNSGSLNWEPSSSSFPCPLPVTWGRRNMFSPSIV 460
           ++EK  K +   + + T+ +P   S+N   S+SS      VT       SP+ +
Sbjct: 136 SVEKSSKLKNKSAPILTKTSPTPVSINNNTSTSSSASSPSVTAAPHLRDSPNYI 189


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 530 DGSQFNDPELGFARVYNYERF 592
           DGS FN  E+     Y  ERF
Sbjct: 309 DGSDFNATEVDSLVTYAGERF 329


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,362
Number of Sequences: 336
Number of extensions: 3340
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)