Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30262
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    27   2.4  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.5  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   9.9  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    25   9.9  

>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 211 ELHYWSYSKDPDLK*YSICHSEIASKQWKNFSNRFSSFG 327
           ++H  SYSKD  L   ++ +    S  W+ F+  F+++G
Sbjct: 189 DVHQLSYSKDSVLFPPTLFYKPRRSIFWRRFTEEFAAYG 227


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 537 EPSSSSFPCPLPVTWGRRNMFSPSIVL*HIPFLHPVP 427
           EP SS+ P P P++   RN  S   ++     ++P+P
Sbjct: 344 EPLSSAIPLPNPMSEKMRNGASKQAIMAQSSKINPLP 380


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 447 PFLHPVPSYYF*CLLTQYLSEIY 379
           P L+ VPS  F C L   L+EIY
Sbjct: 129 PMLNVVPSITFFCSLVCLLAEIY 151


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 299 FFHCLEAISE*HMLYYFKSGSLL 231
           FF CL A+   HML  F++G ++
Sbjct: 335 FFCCLSAVGVLHMLNPFRTGQVV 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,684,508
Number of Sequences: 5004
Number of extensions: 54863
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)