Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30262
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81038-17|CAB76409.1|  381|Caenorhabditis elegans Hypothetical p...    28   6.9  
AL032656-5|CAB76732.1|  381|Caenorhabditis elegans Hypothetical ...    28   6.9  

>Z81038-17|CAB76409.1|  381|Caenorhabditis elegans Hypothetical
           protein Y106G6E.1 protein.
          Length = 381

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -3

Query: 218 CNSRLFKTXXXXXXXX*VDANRRVDVCVL*LLIWIFLLKTRANLERA 78
           C + +F+           D NRR+D+  + L++W  L + +A+LE+A
Sbjct: 101 CLALIFEYIPLNLYQFLKDKNRRIDIVEVKLIVW-QLFRGQAHLEKA 146


>AL032656-5|CAB76732.1|  381|Caenorhabditis elegans Hypothetical
           protein Y106G6E.1 protein.
          Length = 381

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -3

Query: 218 CNSRLFKTXXXXXXXX*VDANRRVDVCVL*LLIWIFLLKTRANLERA 78
           C + +F+           D NRR+D+  + L++W  L + +A+LE+A
Sbjct: 101 CLALIFEYIPLNLYQFLKDKNRRIDIVEVKLIVW-QLFRGQAHLEKA 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,512,903
Number of Sequences: 27780
Number of extensions: 296152
Number of successful extensions: 629
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)