Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30262
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.5  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   4.6  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   6.1  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   6.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.1  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = -2

Query: 558 NSGSLNWEPSSSSFP----CPLPVTWGRRNMFSPSIVL*HIPFLHPVPSYY 418
           N+G   W   SS F     C  PV +GR+   +   +  ++P L   P+ Y
Sbjct: 410 NAGMWMWLSCSSFFQQFFHCYCPVRFGRKADPNGDYIRRYLPVLKNFPTRY 460


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 444 FLHPVPSYYF*CLLTQYLSEIYTNIIKRKDLFVC 343
           F++  PS  F   L + +S  YT +I   + F+C
Sbjct: 136 FIYVHPSATFSLDLNKVVSVFYTAVIPMLNPFIC 169


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 444 FLHPVPSYYF*CLLTQYLSEIYTNIIKRKDLFVC 343
           F++  PS  F   L + +S  YT +I     F+C
Sbjct: 135 FIYVQPSATFSLDLNKVVSVFYTAVIPMFSPFIC 168


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = +1

Query: 415 KIIRRHWVKKWYMLE 459
           K+I +H+++ W+ L+
Sbjct: 158 KLIAKHYLRTWFFLD 172


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = +1

Query: 415 KIIRRHWVKKWYMLE 459
           K+I +H+++ W+ L+
Sbjct: 158 KLIAKHYLRTWFFLD 172


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = +1

Query: 415 KIIRRHWVKKWYMLE 459
           K+I +H+++ W+ L+
Sbjct: 158 KLIAKHYLRTWFFLD 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,974
Number of Sequences: 438
Number of extensions: 3825
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)