Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30262
         (670 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19120.2 68417.m02822 early-responsive to dehydration stress ...    28   4.9  
At4g19120.1 68417.m02821 early-responsive to dehydration stress ...    28   4.9  
At3g55070.1 68416.m06116 expressed protein                             28   4.9  

>At4g19120.2 68417.m02822 early-responsive to dehydration stress
           protein (ERD3) identical to ERD3 protein [Arabidopsis
           thaliana] GI:15320410; contains Pfam profile PF03141:
           Putative methyltransferase; identical to cDNA  ERD3
           GI:15320409
          Length = 600

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 304 KNSSTVWKLSPSDICYIILNRDP 236
           K+   VW+ SP ++CY  L+ DP
Sbjct: 335 KDDIAVWQKSPDNLCYNKLSNDP 357


>At4g19120.1 68417.m02821 early-responsive to dehydration stress
           protein (ERD3) identical to ERD3 protein [Arabidopsis
           thaliana] GI:15320410; contains Pfam profile PF03141:
           Putative methyltransferase; identical to cDNA  ERD3
           GI:15320409
          Length = 600

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 304 KNSSTVWKLSPSDICYIILNRDP 236
           K+   VW+ SP ++CY  L+ DP
Sbjct: 335 KDDIAVWQKSPDNLCYNKLSNDP 357


>At3g55070.1 68416.m06116 expressed protein
          Length = 418

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = -2

Query: 564 NPNSGSLNWEPSSSSFPCPLPVTWGRRNMFSPSIVL*H----IPFLH 436
           N NS ++  E +++  P P+ V+  R N F+ S+ L H    +PF H
Sbjct: 8   NGNSDTVMTESAATITPSPVVVSSSRSNQFTESLKLEHQLLRVPFEH 54


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,466,814
Number of Sequences: 28952
Number of extensions: 268047
Number of successful extensions: 581
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)