Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30261
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      37   0.002
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    32   0.068
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    29   0.63 
SPAC56F8.11 |spc3||signal peptidase subunit Spc3 |Schizosaccharo...    28   1.1  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    28   1.5  
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...    27   3.4  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.4  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    26   5.9  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    26   5.9  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   5.9  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    26   5.9  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   7.8  
SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subuni...    25   7.8  

>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 14/38 (36%), Positives = 27/38 (71%)
 Frame = +2

Query: 518 IVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHI 631
           I+    E++EK S+I++N+ + I++ GN+ G +RK H+
Sbjct: 84  IIYGFPEKEEKQSNIIYNSCIYITENGNLGGVYRKVHL 121


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 32.3 bits (70), Expect = 0.068
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = -1

Query: 484 KVVVGPSSADSANSHHGCFSLVQNAKGIFHNSWKQMMLTPSWPATSMIFLTLLKIAFFCS 305
           ++ V   S ++A SH  CF   QN+  + +       +   +P T   F+ LLK AFF  
Sbjct: 232 QIAVFHQSKNNAASH--CFLKDQNSSILLYKKITYPFMEQLFPPTVQQFMNLLKKAFFDH 289

Query: 304 LTGR 293
           L GR
Sbjct: 290 LFGR 293


>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 545 EKHSDILWNTAVVISDTGNVIGKHRKNHI 631
           E+    L+NTA+V   +G +I  HRK H+
Sbjct: 129 ERKDGKLYNTAMVFDPSGKLIAVHRKIHL 157


>SPAC56F8.11 |spc3||signal peptidase subunit Spc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 185

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +2

Query: 494 TRHQVAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYME 673
           T+H V  ++ S   E+ EK+  ++W+  +   +   +  K   ++I +   FNE +   E
Sbjct: 87  TKHVVVYLVASYSTEKHEKNQVVVWDKILSSPEESKMFMKDTLSNI-QAHPFNEYSNQFE 145

Query: 674 G 676
           G
Sbjct: 146 G 146


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = +2

Query: 512  MVIVSSILERDEKHSDIL 565
            +++VS++LE DEKH D++
Sbjct: 998  LIVVSNLLEMDEKHVDVV 1015


>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 218 PRTSRPDPRELSSRNNSAFHR 280
           PR  RP+PRE SS  ++ + R
Sbjct: 100 PRAGRPEPRERSSAADAGYRR 120


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = +2

Query: 92  ATWKSSTEFILGGGITLKSN*KNPRSLQLRRLTSTSPHTLSRPRTSRPDPRELSSRNNSA 271
           A   +S+ ++    +   S+  +P S     LTS+S  T S P TS       SS ++S+
Sbjct: 201 APTSTSSSYLSSSSVVSSSS--SPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSS 258

Query: 272 FHRGAHRSSS 301
               A  SSS
Sbjct: 259 SSSTASSSSS 268


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 578 PQCSKVCPNAFRPFLISRTRSPLLLDGEF 492
           PQ     PN+  P L S  R PLL   +F
Sbjct: 460 PQSESSSPNSVSPLLPSSDRLPLLRQSQF 488


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 76  NNLTGRDLEEFNRIHFGRRNNLEI 147
           NN+  R +EE N I  G+R  LE+
Sbjct: 8   NNILKRHIEEDNNIDNGKRKKLEL 31


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 652 VKIADSRNVVLAMFSDHVSGVTNDNRSV 569
           V I +S N++LA+F+   +GV  D+R V
Sbjct: 484 VTIFESSNILLALFNTLSNGVWKDDRLV 511


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 46  ETHSLESII-NNNLTGRDLEEFNRIHFGRRNNLEIKLK 156
           E H +E +I + N+T  DL  F  + FG+ N   ++ K
Sbjct: 369 EFHQVEGVICDRNITLGDLIGFLEVFFGKMNVKNLRFK 406


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 404 HIPQLLETDDVNTLLAGNIDDLLDFIENC 318
           ++P+LLE  D+N L  G + + LD + NC
Sbjct: 222 NLPKLLERPDINDLHQGILQE-LDSLCNC 249


>SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subunit
           Nat3 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
 Frame = -2

Query: 603 TFPVSLMTTAVFQSMSECFSSLSNIEDTITIAT*WRVPEG--RSWSAHLQLIRQTRTTAA 430
           TF +S   + + +  S C    S++ D   +       EG  + W  H+  I     +  
Sbjct: 26  TFNISFYLSYLNKWPSLCVVQESDLSDPTLMGYIMGKSEGTGKEWHTHVTAITVAPNSRR 85

Query: 429 SPLCRTRRAYSTTLGN 382
             L RT   Y  T+GN
Sbjct: 86  LGLARTMMDYLETVGN 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,682
Number of Sequences: 5004
Number of extensions: 57010
Number of successful extensions: 218
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)