Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30261
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)                 33   0.22 
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.38 
SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10)          32   0.38 
SB_47367| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   4.7  
SB_17868| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.7e-36)         29   4.7  
SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)             29   4.7  
SB_33687| Best HMM Match : Filament (HMM E-Value=0.1)                  28   6.2  
SB_15536| Best HMM Match : MdcD (HMM E-Value=3.9)                      28   6.2  
SB_9767| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_8320| Best HMM Match : p450 (HMM E-Value=0)                         28   6.2  
SB_36254| Best HMM Match : Filament (HMM E-Value=0.21)                 28   8.1  
SB_20003| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)                   28   8.1  
SB_52455| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25)                 28   8.1  
SB_16799| Best HMM Match : Extensin_2 (HMM E-Value=0.063)              28   8.1  
SB_1865| Best HMM Match : DUF1168 (HMM E-Value=5)                      28   8.1  

>SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)
          Length = 242

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +2

Query: 509 AMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHI 631
           A ++  SI ER       L+NT++    +GN++GKHRK H+
Sbjct: 80  AYIVGGSIPERASNRK--LYNTSLSYDPSGNLMGKHRKIHL 118


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +2

Query: 155  KNPRSLQLRRLTSTSPHTLSRPRTSRPDPRELSSRNNSAFHRGAHRSSSQRAKE 316
            K PR     R  S+SP   SRP+ + P PR        +  RG+ RS S   +E
Sbjct: 1047 KRPRHQSRERRPSSSPPRRSRPQRTSPSPRRTPEDRRRS--RGSRRSPSPPKRE 1098


>SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10)
          Length = 128

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +2

Query: 509 AMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHI 631
           A ++  SI ER       L+NT++    +GN++GKHRK H+
Sbjct: 36  AYIVGGSIPERASNGK--LYNTSLSYDPSGNLMGKHRKIHL 74


>SB_47367| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 914

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 158 NPRSLQLRRLTSTSPHTLSRPRTSRPDP 241
           +PR + L+   S+SPHT  R R+S  DP
Sbjct: 687 SPRHVLLQEARSSSPHTSIRNRSSSSDP 714


>SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +2

Query: 509 AMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRK 622
           A ++  SI ER       L+NT++    +GN++GKHRK
Sbjct: 82  AYIVGGSIPERASNGK--LYNTSLSYDPSGNLMGKHRK 117


>SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1041

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 239 PRELSSRNNSAFHRGAHRSSSQRAKESN 322
           P +   + +  FH G+H+S S++ K SN
Sbjct: 631 PSKEGEKKDDHFHNGSHKSGSRKRKSSN 658


>SB_17868| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.7e-36)
          Length = 592

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +2

Query: 143 KSN*KNPRSLQLRRLTSTSPHTLSRPRTSRPDPRELSSRNNSAFHRGAHRSSSQRA 310
           ++N K P+ L+   L  TS   L      + DPR   S N +A  R  H+S +Q A
Sbjct: 393 RTNRKMPQWLRTLILNWTSRVVLLHDVVVKTDPRRQMSFNPAAKRRTMHKSDNQSA 448


>SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 770

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -3

Query: 407 GHIPQLLETDDVNTLLAGNIDDLLDFIENCFLLLVDW 297
           G +P   +   +NTLL GN  D   F  NC  LL  W
Sbjct: 723 GLVPYWTKLFGINTLLVGNARDSHLFCRNCSGLLPYW 759


>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
          Length = 1425

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 240  PENCQVGIIQHSIAVPTDR-PVNEQKKAIFNKVKKIIDVAGQEGVN 374
            P N     +   I VP  + P N+ ++A+F++V K+ ++ GQ+ V+
Sbjct: 971  PNNPSEEFVHKPILVPVMKSPRNDDERALFSRVSKVKNLWGQDLVD 1016


>SB_33687| Best HMM Match : Filament (HMM E-Value=0.1)
          Length = 700

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 545 EKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYME 673
           +K  D LW  A  + D      KH++N I R  +F E ++Y E
Sbjct: 391 QKRFDTLWVKAKSMMDEET---KHKENAIKRSKEFEERSHYFE 430


>SB_15536| Best HMM Match : MdcD (HMM E-Value=3.9)
          Length = 146

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 442 HHGCFSLVQNAKGIFHNSWKQMMLTPSW 359
           HH CF ++ +A  +      Q  ++PSW
Sbjct: 44  HHACFGIIPSALSVLVERGDQEAVSPSW 71


>SB_9767| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 291

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +2

Query: 143 KSN*KNPRSLQLRRLTSTSPH---TLSRPRTSRPDPRELSSRNNSAFHRGAHRSSSQRAK 313
           K+N K  +  Q +   +  P+   TL R   + P PRE  S +   F  G HRS     +
Sbjct: 4   KNNKKKKQEKQNKTKKTDHPNNRLTLGRGVLTGPPPREFFSGSPDQFRNGIHRSMEMDLE 63

Query: 314 ESN 322
           +++
Sbjct: 64  DTS 66


>SB_8320| Best HMM Match : p450 (HMM E-Value=0)
          Length = 1207

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -3

Query: 554 NAFRPFLISRTRSPLLLDGEFPKEGRGRPIFS*FGKLAPRLLLPC 420
           N+ + F  +  RS +  DGE  K GR    FS   KLA  +L  C
Sbjct: 382 NSAKSFTRNGARSIVRADGEERKFGRSEEEFSDLDKLAINILYDC 426


>SB_36254| Best HMM Match : Filament (HMM E-Value=0.21)
          Length = 589

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
 Frame = +2

Query: 191 STSPHTLSR------PRTSRPD-PRELSSRNNSAFHRGAHRSSSQRAKESN 322
           S SPH +SR      P + RP  PR +S R +  F R    S+       N
Sbjct: 536 SNSPHNVSRSPHKQEPSSPRPSSPRSMSPRRSHVFRRDIDESAGMEVPRQN 586


>SB_20003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 31  AIMENETHSLESIINNNLTGRDLEEFNRIHFGRR 132
           ++MENET ++  I     +G +  E  R+ F RR
Sbjct: 291 SLMENETSTIRFIARKVKSGMENTELERLEFSRR 324


>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
          Length = 1249

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +2

Query: 191 STSPHTLSRPRTSRPDPRELSSRNNSAFHRGAHRSSSQRAKES 319
           S SP+    P  + P P  ++     AF +G HR S  R   S
Sbjct: 4   SPSPNVPDIPPPTTPSPPRMTPTKIRAFFQGIHRGSRNRLGNS 46


>SB_52455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 229

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
 Frame = +2

Query: 137 TLKSN*KNPRSLQLRRLTSTSPHTLS-RPRTSRPDPRELSSRNNSAFHRGAHRSSSQRAK 313
           +++S  + PR    R  T   P     RPR     PREL  R++     G  R    R  
Sbjct: 32  SVRSERETPRDRNGRTATRRRPERRDERPRKLDDKPRELLDRDSGRAGSGEKREDKHRRL 91

Query: 314 ESNFQ*SQED 343
           E   Q  + D
Sbjct: 92  EKPAQRERND 101


>SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25)
          Length = 867

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +3

Query: 246 NCQVGIIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQELW 398
           N  +  I H   VP+    N +  A   K+ ++  VA Q   +++C  E W
Sbjct: 112 NSDISSINHPAVVPSLLVSNTRSLA--PKISELQCVASQNSADVVCITETW 160


>SB_16799| Best HMM Match : Extensin_2 (HMM E-Value=0.063)
          Length = 597

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 182 RLTSTSPHTLSRPRTSRPDPRELSSRNNSAFHR 280
           R + +S  TLS P T +P P +++ R++  + R
Sbjct: 86  RRSGSSDSTLSDPDTPKPSPTKVNDRSSPTYER 118


>SB_1865| Best HMM Match : DUF1168 (HMM E-Value=5)
          Length = 289

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +2

Query: 155 KNPRSLQLRRLTSTSPHTLSRPRTSRPDPRELSSRNNSAFHRGAHRSSSQRAK 313
           +NP + +L    + S  T S  RT RPD     +  N+  HR     S Q  K
Sbjct: 68  QNPMATELDE-KAISSRTTSANRTRRPDSYRSKNSENTDSHRSRKSESHQSRK 119


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,574,339
Number of Sequences: 59808
Number of extensions: 444378
Number of successful extensions: 1519
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1515
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)