Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30261
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical p...    99   3e-21
AF098986-5|AAC67426.1|  671|Caenorhabditis elegans Hypothetical ...    31   0.58 
U41275-2|AAA82465.1|  438|Caenorhabditis elegans Hypothetical pr...    31   0.77 
Z92828-1|CAB07337.1|  512|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z73098-4|CAD44145.1|  565|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z73098-3|CAD44144.1|  501|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z67880-1|CAA91794.1|  256|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AF016416-8|AAB65271.1|  388|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z75544-2|CAC42316.1|  480|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z75544-1|CAA99881.1|  476|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AF038612-1|AAB92043.1|  348|Caenorhabditis elegans Hypothetical ...    28   7.2  
Z93379-2|CAB07592.1|  170|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z35663-14|CAA84733.1|  805|Caenorhabditis elegans Hypothetical p...    27   9.5  

>U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical
           protein F13H8.7 protein.
          Length = 387

 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 43/59 (72%), Positives = 49/59 (83%)
 Frame = +2

Query: 512 MVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGH 688
           +VI+S ILERDE+  D++WNTAVVIS TG VIG+ RKNHIPRVGDFNES YYME   GH
Sbjct: 162 IVIISPILERDEEKDDVIWNTAVVISHTGRVIGRSRKNHIPRVGDFNESTYYMESTLGH 220



 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 46/89 (51%), Positives = 56/89 (62%)
 Frame = +3

Query: 240 PENCQVGIIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPFAFC 419
           P   +V  IQ+ I  PT   V EQ+ AI  +V  +I+ A   G N+I  QE W MPFAFC
Sbjct: 71  PRLVRVAAIQNKIHRPTTDSVVEQRDAIHQRVGAMIEAAASAGANVIGLQEAWTMPFAFC 130

Query: 420 TREKQPWCEFAESAEDGPTTTFLRELAIK 506
           TRE+ PW EFAES   GPTT FL +LA+K
Sbjct: 131 TRERLPWTEFAESVYTGPTTQFLSKLAVK 159


>AF098986-5|AAC67426.1|  671|Caenorhabditis elegans Hypothetical
           protein C36C9.4 protein.
          Length = 671

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +2

Query: 479 DLPSGTRHQVAMVIVSSILERDEKHSDILWNTAV--VISDTGNVIGKHR 619
           DLP+G   +   +++  I+E  E  +  LWN  +  ++SD  +  GK R
Sbjct: 211 DLPTGLMQKSTNIVLGGIVECSENPTTTLWNALIPFILSDVESHTGKVR 259


>U41275-2|AAA82465.1|  438|Caenorhabditis elegans Hypothetical
           protein T25D1.2 protein.
          Length = 438

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +2

Query: 479 DLPSGTRHQVAMVIVSSILERDEKHSDILWNTAV--VISDTGNVIGKHR 619
           DLP+G   +   +++  I+E  E  +  LWN  +  ++SD  +  GK R
Sbjct: 283 DLPTGLMQKSTNIVLGGIVECSENPTTTLWNALIPFILSDVESHSGKVR 331


>Z92828-1|CAB07337.1|  512|Caenorhabditis elegans Hypothetical
           protein C37A5.1 protein.
          Length = 512

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -2

Query: 618 RCFPITFPVSLMTTAVFQSMSECFSSLSNIEDT-ITIAT*WRVPEGRSWSAHLQLIR 451
           +C P+TF ++   T +       F+++  IE+T I IAT  +  EG    A   +IR
Sbjct: 75  KCVPLTFMLAFFVTIIVDRWKNMFANIGFIENTAIAIATLVKGTEGDVLLAKRTIIR 131


>Z73098-4|CAD44145.1|  565|Caenorhabditis elegans Hypothetical
           protein T21C9.3b protein.
          Length = 565

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 315 KAIFNKVKKIIDVAGQEGVNIICFQELWNMP-FAFCTREKQPWCEF 449
           K +F+  ++  D   +  +NI+ F E   MP   FC   +Q W  F
Sbjct: 46  KDVFDLFEEYFDYPKESDINIV-FNESMTMPNVTFCMSRQQAWSHF 90


>Z73098-3|CAD44144.1|  501|Caenorhabditis elegans Hypothetical
           protein T21C9.3a protein.
          Length = 501

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 315 KAIFNKVKKIIDVAGQEGVNIICFQELWNMP-FAFCTREKQPWCEF 449
           K +F+  ++  D   +  +NI+ F E   MP   FC   +Q W  F
Sbjct: 46  KDVFDLFEEYFDYPKESDINIV-FNESMTMPNVTFCMSRQQAWSHF 90


>Z67880-1|CAA91794.1|  256|Caenorhabditis elegans Hypothetical
           protein C34E7.3 protein.
          Length = 256

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = -1

Query: 493 SRRKVVVGPSSADSANSHHGCFSLVQNAKGIFHNSWKQMMLTPSWPATS 347
           SR K+    +S+   +  HG + +V+ AK  F + +++  +TPS P T+
Sbjct: 197 SRMKIRKDSNSSKKEDMEHGDWWIVRVAKMGFESCFQRRRITPSPPPTN 245


>AF016416-8|AAB65271.1|  388|Caenorhabditis elegans Hypothetical
           protein F29A7.1 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +2

Query: 566 WNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYM 670
           WN  + + D   ++   +  H+ R GD+   NY++
Sbjct: 266 WNKKIAMKDVPFIVYSPQFEHVIRGGDWENENYFL 300


>Z75544-2|CAC42316.1|  480|Caenorhabditis elegans Hypothetical
           protein K02A11.1b protein.
          Length = 480

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +3

Query: 342 IIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLREL 497
           I+ +  Q G N++      NMP+  C  E+      +E A  G T +++ E+
Sbjct: 138 IVKILIQAGANLLAVNAEGNMPYDICDHEETLDVIESEMAARGITQSYIDEM 189


>Z75544-1|CAA99881.1|  476|Caenorhabditis elegans Hypothetical
           protein K02A11.1a protein.
          Length = 476

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +3

Query: 342 IIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLREL 497
           I+ +  Q G N++      NMP+  C  E+      +E A  G T +++ E+
Sbjct: 138 IVKILIQAGANLLAVNAEGNMPYDICDHEETLDVIESEMAARGITQSYIDEM 189


>U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical
           protein T27A3.4 protein.
          Length = 203

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +2

Query: 179 RRLTSTSPHTLSRPRT---SRPDPRELSSRNNSAFHRGAHRSSSQ 304
           R  +S    + SRPRT   SR   R  S    S+  R  HRSSS+
Sbjct: 125 RSRSSKRSRSRSRPRTRSGSRSSSRSRSGSRRSSRRRSRHRSSSK 169


>AF038612-1|AAB92043.1|  348|Caenorhabditis elegans Hypothetical
           protein F13B6.1 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 667 VVVGFVKIADSRNVVLAMFSDHVSGVTN-DNRSVP 566
           V+ GFV + DS+++V    SD + G+TN D   +P
Sbjct: 156 VLNGFVGLPDSKDMVQFFDSDSIEGLTNYDQLELP 190


>Z93379-2|CAB07592.1|  170|Caenorhabditis elegans Hypothetical
           protein F21H7.3 protein.
          Length = 170

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 315 KAIFNKVKKIIDVAGQEGVNIICFQELW 398
           K +FNKVKK+++   Q+G     F+  W
Sbjct: 58  KILFNKVKKLMEDVPQDGRKKNWFENFW 85


>Z35663-14|CAA84733.1|  805|Caenorhabditis elegans Hypothetical
           protein T04A8.16 protein.
          Length = 805

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/77 (22%), Positives = 33/77 (42%)
 Frame = -3

Query: 572 CSKVCPNAFRPFLISRTRSPLLLDGEFPKEGRGRPIFS*FGKLAPRLLLPCAEREGHIPQ 393
           CS +   +       R +  L+    FP++  G+PI++  GK   +  L  A R+  I  
Sbjct: 295 CSFISSLSIAALYEKRFKKQLVTSIIFPQDANGKPIYNPAGKYMFKFHLNGAWRKVLIDD 354

Query: 392 LLETDDVNTLLAGNIDD 342
               D+ N ++    ++
Sbjct: 355 YFPVDENNRMMCSQTEN 371



 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 167 SLQLRRLTSTSPHTLSRPRTSRPDPRELSSRNNSAFHRG 283
           ++ L  LT   P  +    TS+ DP E+  +    FHRG
Sbjct: 399 NIDLNALTGWIPERIELSDTSKADPDEVFRKLFDRFHRG 437


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,793,415
Number of Sequences: 27780
Number of extensions: 327513
Number of successful extensions: 1062
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)