Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30260
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo... 29 0.45
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac... 29 0.78
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 28 1.0
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 26 4.2
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 26 5.5
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3... 26 5.5
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom... 26 5.5
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 7.3
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 25 7.3
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 25 9.6
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 9.6
SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyce... 25 9.6
>SPAC30.02c |||RNA polymerase II elongator complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 281
Score = 29.5 bits (63), Expect = 0.45
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 371 YSSHLSQYTTHCYLHISHPAD 433
Y S YTTHC +H++ P D
Sbjct: 99 YCESKSMYTTHCVIHVAVPQD 119
>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 28.7 bits (61), Expect = 0.78
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -2
Query: 488 ILSNPSSISKDFLRASSVCPPDERYASSNEWYTEKGEKNMLSSGTASLIVLKRFN 324
++SNPS++ D+ VCPP+E S++ T+ + L + T + FN
Sbjct: 419 VVSNPSTLDDDY-NYMFVCPPEEYTYSTDNVRTDSLDLQSLPTPTLEQLESVPFN 472
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +1
Query: 82 FYNLPSARRFYLILNQFTRKENNSYLHTIRG-HHSNHNAEVSN 207
F+ LPS +L R N+ L + G H +HNA+ N
Sbjct: 398 FHGLPSLADLPAVLESMFRPSGNNNLLNLNGIFHPDHNAQTEN 440
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 484 YPIHPRFLKISSELLQFVRRMRDMQVAM 401
+P P L + SEL+QF RR +Q M
Sbjct: 460 FPSSPSSLPLLSELIQFSRRPSPVQTGM 487
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 509 LYAVIKFILSNPSSISKDFLRASSVCP 429
L++ ++ IL +P+S LRA +CP
Sbjct: 545 LFSTLRIILEHPNSSRLQKLRAPGLCP 571
>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 482 SNPSSISKDFLRASSVCPPDERYASSNEWYTEKGEK 375
SN S+ K+ +A + PP ++ ++E EKGE+
Sbjct: 296 SNDSASRKEKPKARASTPPPLNFSRASEHRNEKGER 331
>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 535
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/57 (24%), Positives = 22/57 (38%)
Frame = +2
Query: 176 IIRTTMLRCLIVVLFVVSTVTSQCFYKMTLLKS*IRRRGPLCITASWDSR*IFLIQS 346
+ R T L + ++ V C + + RRGPL + W S F+ S
Sbjct: 293 VFRGTGLNSPFLAALILDAVNFGCTFGAIFVLEYFGRRGPLIVGGVWQSICFFIYAS 349
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 7.3
Identities = 23/84 (27%), Positives = 33/84 (39%)
Frame = +1
Query: 175 HHSNHNAEVSNCGIVRRFNGYQPVLLQDDSSKKLNPEARTALYNGQLGFTLNLFNTINDA 354
H+ NH + I GY+ D+ ++ N E T N ++ FNTI +
Sbjct: 72 HNLNHELSSNKNRISSNVEGYEDDFSFDEEGEEGNNEFNTLRPNKYQDADVDEFNTIRAS 131
Query: 355 VPDDNIFFSPFSVYHSLLLAYLSS 426
PFS +L YLSS
Sbjct: 132 ETASQRPPIPFS-SDTLKKTYLSS 154
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -1
Query: 360 GYSVVDCIKKI*RESQLAVIQSGPRLRIQLFRRVI 256
G + DC ++ RESQ SGP L + F+RVI
Sbjct: 99 GIKIQDCSERSLRESQ-----SGPLLLVDPFQRVI 128
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 25.0 bits (52), Expect = 9.6
Identities = 21/62 (33%), Positives = 29/62 (46%)
Frame = +1
Query: 325 LNLFNTINDAVPDDNIFFSPFSVYHSLLLAYLSSGGQTEEALRKSLEIEDGLDKINLMTA 504
L LF +N+A PDD+I P +Y+ + L LR L+ DG +I L
Sbjct: 64 LTLFAPLNEAFPDDSI--EPNLLYYIVNTTELD-----RSVLRTQLKSSDG-QQIALKIH 115
Query: 505 YK 510
YK
Sbjct: 116 YK 117
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.0 bits (52), Expect = 9.6
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -2
Query: 485 LSNPSSISKDFLRASSVCPPDERYASSNEWYTEKGEKNMLSSGTASLIVLK 333
L N + + L S C P + A+ + W+ E G + T S VLK
Sbjct: 1601 LLNSLAYTVSSLEVSQRCSPKQSGATRSVWFNELGPLTLSFLPTLSDTVLK 1651
>SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 443 SSVCPPDERYASSNEWYTEKGEKNMLSSGTASLIV 339
+S CP A+SN+ YT KG++ G + +V
Sbjct: 2 ASCCPTSRGAAASNKSYTFKGKEIENFGGLTTYVV 36
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,584,675
Number of Sequences: 5004
Number of extensions: 52281
Number of successful extensions: 150
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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