Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30260
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0270 - 7011363-7012302,7013237-7013640,7014264-7014333,701...    29   2.5  
01_07_0068 - 40861266-40861381,40861469-40861718,40861813-408619...    29   2.5  
04_04_1528 + 34172149-34172233,34172335-34172414,34172621-341726...    29   3.3  
07_01_0055 + 424097-427129                                             27   9.9  
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502...    27   9.9  

>03_02_0270 -
           7011363-7012302,7013237-7013640,7014264-7014333,
           7014835-7015331,7015959-7016283,7018060-7018292
          Length = 822

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/75 (28%), Positives = 29/75 (38%)
 Frame = -2

Query: 476 PSSISKDFLRASSVCPPDERYASSNEWYTEKGEKNMLSSGTASLIVLKRFNVNPSWPLYK 297
           PS      L   S C P  R+  SNE  T       +    A++I  +     P WP Y 
Sbjct: 156 PSLSRWHLLELLSSCLP-HRFTHSNE--TSLSVLQSMKEDIANMIAPQLIRPIPRWPFYA 212

Query: 296 AVRASGFSFLEESSC 252
            +  + F  L  S+C
Sbjct: 213 FLGGAMFCLLASSTC 227


>01_07_0068 -
           40861266-40861381,40861469-40861718,40861813-40861914,
           40862687-40862759,40863590-40863754,40866380-40866459,
           40867565-40867630,40867764-40868123,40868388-40868648
          Length = 490

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +1

Query: 139 KENNSYLHTIRGHHSNHNAEVSNCGIVRRFNGYQPVLLQDDSSKKLNPEART 294
           +E+N Y+  +       + E+ N  ++ RF+  + VLL DD S  L P+  +
Sbjct: 366 EESNLYILVLGALGGRFDHEMGNINVLYRFSNIRIVLLSDDCSIFLLPKTHS 417


>04_04_1528 +
           34172149-34172233,34172335-34172414,34172621-34172689,
           34172780-34172837,34173296-34173357,34173441-34173554,
           34173862-34173964,34174085-34174134,34174335-34174724,
           34174918-34175244,34175360-34175689
          Length = 555

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/66 (33%), Positives = 35/66 (53%)
 Frame = -2

Query: 473 SSISKDFLRASSVCPPDERYASSNEWYTEKGEKNMLSSGTASLIVLKRFNVNPSWPLYKA 294
           + IS+D L A +V  P E  AS+N + ++ G+K  L S T+ +  LK+  +    PL K 
Sbjct: 87  NEISQDTL-AHAVRHPSELPASANWFNSKSGKKIPLRSVTSIIDGLKKSYIEKLRPLEKT 145

Query: 293 VRASGF 276
            +   F
Sbjct: 146 YQFDDF 151


>07_01_0055 + 424097-427129
          Length = 1010

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +1

Query: 337 NTINDAVPD---DNIFFSPFSVYHSLLLAYLSSGGQTEEALRKSLEIEDGL 480
           N ++ ++P    D  F S FSV H+ L+  + +GGQ       S E   GL
Sbjct: 584 NNLSGSIPSSLTDLTFLSKFSVAHNHLVGPIPNGGQFFTFSNSSFEGNPGL 634


>03_05_0293 +
           22849103-22849513,22849670-22849756,22850156-22850284,
           22850507-22851262,22853474-22854250
          Length = 719

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 367 NIFFSPFSVYHSLLLAYLSSGGQTEEALRKSL 462
           N+ FSP S++ +L L    +GG T + L  +L
Sbjct: 36  NVAFSPLSLHVALSLVAAGAGGATRDQLASAL 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,333,994
Number of Sequences: 37544
Number of extensions: 314581
Number of successful extensions: 765
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)