Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30260
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      31   0.83 
SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076)              30   1.9  
SB_69| Best HMM Match : No HMM Matches (HMM E-Value=.)                 29   4.4  
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_44584| Best HMM Match : DEAD_2 (HMM E-Value=0.12)                   28   7.7  

>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 319 FTLNLFNTINDAVPDDNIFFSPFSVYHSLLLAYLSSGGQTEEALRKS 459
           F L+L   +       N+F+SP S+  +L + YL + G T   + K+
Sbjct: 13  FALDLHRVLTAQDGQTNLFYSPASIVVALAMTYLGARGNTATQMTKT 59


>SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076)
          Length = 1269

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +1

Query: 223 RFNGYQPVLLQDDSSKKLNPEARTALYNGQLGFTLNLFNTINDAVPDDNIF 375
           R   YQP++  D   +  NP AR A Y    G  +  F ++ + V +DN++
Sbjct: 702 RAQAYQPMVHYDPMPQTSNPAARPAFYAVPPGGPVQ-FGSVYNPVNNDNVY 751


>SB_69| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 662

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
 Frame = +1

Query: 373 FFSPFSVYHSLLLAYLSSGGQTEEALRKSLEIEDGLDKINLMTAYK*TNELAV*T-TTAI 549
           FF+  S+  +  L  ++   QT EALRKSL     +   N       +    V   +TAI
Sbjct: 66  FFATRSITSTFKLREIAGSHQTVEALRKSLNTMAAMQTFNDSAEIITSMNFTVPPGSTAI 125

Query: 550 VMSLRARTNCSQLMILMCDNAC 615
               RA   C+ ++I+     C
Sbjct: 126 AEEPRAAFVCNAIVIVHITRRC 147


>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1906

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 118  ILNQFTRKENNSYLHTIRGHHSNHNAEVSNC 210
            I+N  +   NNS ++    +H+N+N  ++NC
Sbjct: 1720 IINNNSINNNNSSINNRSNNHNNNNNSINNC 1750


>SB_44584| Best HMM Match : DEAD_2 (HMM E-Value=0.12)
          Length = 540

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 551 TIAVVVYTASSFVYLYAVIKFILSNPSSI 465
           TIA ++YT +   YLY V K  +  P  I
Sbjct: 172 TIAALLYTCNVICYLYVVCKTAIKKPCRI 200


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,318,287
Number of Sequences: 59808
Number of extensions: 386589
Number of successful extensions: 1056
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)