Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30260
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    23   2.6  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    23   2.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.5  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   7.8  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 283 PDSAF*KSHLVEA 245
           PDS F KSH+ EA
Sbjct: 58  PDSVFFKSHITEA 70


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 283 PDSAF*KSHLVEA 245
           PDS F KSH+ EA
Sbjct: 58  PDSVFFKSHITEA 70


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
 Frame = -2

Query: 368 LSSGTASLI-VLKRFNVNPSWPLYKAVRASGFSFLEESSCRSTGW*P 231
           L +GT S     K F + PS  LYK  R  G       +   T W P
Sbjct: 477 LRTGTISANKASKAFGI-PSSTLYKIARREGIRLAAPFNASPTTWSP 522


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +1

Query: 79  IFYNLPSARRFYLILNQFTRKENN 150
           ++YN PS+   Y +  +   K  N
Sbjct: 264 LYYNSPSSENLYYVNTESLMKSEN 287


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,416
Number of Sequences: 438
Number of extensions: 3740
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)