Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30260
         (657 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13790.1 68414.m01619 XH/XS domain-containing protein / XS zi...    31   0.89 
At5g04370.1 68418.m00429 S-adenosyl-L-methionine:carboxyl methyl...    30   1.6  
At1g62170.1 68414.m07013 serpin family protein / serine protease...    29   2.1  
At1g70280.2 68414.m08086 NHL repeat-containing protein contains ...    29   3.6  
At4g21380.1 68417.m03089 S-locus protein kinase, putative (ARK3)...    28   6.3  
At3g63130.1 68416.m07090 RAN GTPase activating protein 1 (RanGAP...    27   8.3  

>At1g13790.1 68414.m01619 XH/XS domain-containing protein / XS zinc
           finger domain-containing protein contains Pfam domains
           PF03469: XH domain, PF03468: XS domain and PF03470: XS
           zinc finger domain
          Length = 736

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +1

Query: 154 YLHTIRGHHSNHNAEVSNCGIVRRFNGYQPVLLQDDSSKK-LNPEARTALYNGQLGFT 324
           Y+H  +G  +N     +     R++ G     +++D  KK  NP   T L+NG+LGFT
Sbjct: 219 YVHPWKGILANMKRTFNEK--TRKYAGESGSKIREDLIKKGFNPHKVTPLWNGRLGFT 274


>At5g04370.1 68418.m00429 S-adenosyl-L-methionine:carboxyl
           methyltransferase family protein similar to
           SAM:salicylic acid carboxyl methyltransferase (SAMT)
           [GI:6002712][Clarkia breweri] and to SAM:benzoic acid
           carboxyl methyltransferase
           (BAMT)[GI:9789277][Antirrhinum majus]
          Length = 396

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = -3

Query: 517 LSTYTQSLNLFYPIHPRFLKISSELLQFVRRMRDMQVAMSGILRKVRRICCH 362
           LSTY   LN F      FLK+ SE +    RM    +  + I   + R CCH
Sbjct: 209 LSTYKAYLNQFQRDFATFLKLRSEEMVSNGRMVLTFIGRNTIDNPLHRDCCH 260


>At1g62170.1 68414.m07013 serpin family protein / serine protease
           inhibitor family protein similar to phloem serpin-1
           GI:9937311 from [Cucurbita maxima]; contains Pfam
           profile PF00079: Serpin (serine protease inhibitor)
          Length = 433

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 343 INDAVPDDNIFFSPFSVYHSLLLAYLSSGGQTEEALR 453
           I+    + N  FSP S+  +L +   SSGG+  E LR
Sbjct: 83  ISSVAKNSNFVFSPASINAALTMVAASSGGEQGEELR 119


>At1g70280.2 68414.m08086 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 509

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 20/79 (25%), Positives = 33/79 (41%)
 Frame = +1

Query: 79  IFYNLPSARRFYLILNQFTRKENNSYLHTIRGHHSNHNAEVSNCGIVRRFNGYQPVLLQD 258
           I  + PSA     ILN F     +S +  +    +     ++   +V+  NGY    + D
Sbjct: 18  IVSSAPSANSPAKILNGFISNHGSSLMKWLWSLKTTTKTTIATRSMVKFENGYSVETVFD 77

Query: 259 DSSKKLNPEARTALYNGQL 315
            S   + P +   L NG+L
Sbjct: 78  GSKLGIEPYSIEVLPNGEL 96


>At4g21380.1 68417.m03089 S-locus protein kinase, putative (ARK3)
           identical to PIR|T05180|T05180 S-receptor kinase ARK3
           precursor - [Arabidopsis thaliana]
          Length = 850

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +1

Query: 43  SKPYHYS*QNNXIFYNLPSARRF-YLILNQFTRKENNSYLHTIRGHHSNHNAEVSNCGIV 219
           S+ Y     N   F  +P  + F Y++ N  T KE  +Y   I          +S+ G++
Sbjct: 214 SRMYRSGPWNGIRFSGVPEMQPFEYMVFNFTTSKEEVTYSFRITKSDVYSRLSISSSGLL 273

Query: 220 RRF 228
           +RF
Sbjct: 274 QRF 276


>At3g63130.1 68416.m07090 RAN GTPase activating protein 1 (RanGAP1)
           contains Pfam PF00560: Leucine Rich Repeat domains;
           identical to RAN GTPase activating protein 1
           (GI:6708466)[Arabidopsis thaliana]
          Length = 535

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +1

Query: 316 GFTLNLFNTINDAVPDDNI--FFSPFSVYHSLLLAYLSSGGQTEEALRKSLEIEDGLDKI 489
           G  L   N  ++A+ +  I  F S  +  H L   YL + G +E+A R   E+    DKI
Sbjct: 208 GSKLRYLNLSDNALGEKGIRAFASLINSQHDLEELYLMNDGISEDAARAVRELLPSTDKI 267

Query: 490 NLM 498
            ++
Sbjct: 268 RVL 270


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,300,498
Number of Sequences: 28952
Number of extensions: 262364
Number of successful extensions: 780
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)