Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30256
(560 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 38 0.001
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 38 0.001
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 38 0.001
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 38 0.001
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 38 0.001
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 38 0.001
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 38 0.001
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 38 0.001
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 36 0.003
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 36 0.003
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 36 0.003
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc... 27 1.9
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.5
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 26 4.4
SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c... 25 5.8
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 7.6
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac... 25 7.6
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 37.5 bits (83), Expect = 0.001
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = -1
Query: 224 GYRVFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFVD 54
G +F +DL A++ I V + D K A P G+FE M G+ A FQ F++
Sbjct: 494 GSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFIN 550
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 37.5 bits (83), Expect = 0.001
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = -1
Query: 224 GYRVFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFVD 54
G +F +DL A++ I V + D K A P G+FE M G+ A FQ F++
Sbjct: 494 GSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFIN 550
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 37.5 bits (83), Expect = 0.001
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = -1
Query: 224 GYRVFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFVD 54
G +F +DL A++ I V + D K A P G+FE M G+ A FQ F++
Sbjct: 494 GSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFIN 550
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 37.5 bits (83), Expect = 0.001
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = -1
Query: 224 GYRVFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFVD 54
G +F +DL A++ I V + D K A P G+FE M G+ A FQ F++
Sbjct: 494 GSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFIN 550
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 37.5 bits (83), Expect = 0.001
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = -1
Query: 224 GYRVFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFVD 54
G +F +DL A++ I V + D K A P G+FE M G+ A FQ F++
Sbjct: 494 GSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFIN 550
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 37.5 bits (83), Expect = 0.001
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = -1
Query: 224 GYRVFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFVD 54
G +F +DL A++ I V + D K A P G+FE M G+ A FQ F++
Sbjct: 494 GSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFIN 550
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 37.5 bits (83), Expect = 0.001
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = -1
Query: 224 GYRVFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFVD 54
G +F +DL A++ I V + D K A P G+FE M G+ A FQ F++
Sbjct: 494 GSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFIN 550
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 37.5 bits (83), Expect = 0.001
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = -1
Query: 224 GYRVFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFVD 54
G +F +DL A++ I V + D K A P G+FE M G+ A FQ F++
Sbjct: 494 GSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFIN 550
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 36.3 bits (80), Expect = 0.003
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = -1
Query: 224 GYRVFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFVD 54
G +F +DL A++ I V + D K A P G+FE M G+ A FQ F++
Sbjct: 494 GSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFIN 550
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 36.3 bits (80), Expect = 0.003
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = -1
Query: 224 GYRVFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFVD 54
G +F +DL A++ I V + D K A P G+FE M G+ A FQ F++
Sbjct: 494 GSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFIN 550
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 36.3 bits (80), Expect = 0.003
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = -1
Query: 224 GYRVFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFVD 54
G +F +DL A++ I V + D K A P G+FE M G+ A FQ F++
Sbjct: 494 GSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFIN 550
>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
Sen2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 27.1 bits (57), Expect = 1.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 220 IVYLLPSTWLKHLIKYLFLKTIYQKQ 143
I+ P TW+ ++ +YLF KT Q Q
Sbjct: 23 IILTNPLTWIPYIYRYLFRKTPRQVQ 48
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 26.6 bits (56), Expect = 2.5
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = -1
Query: 395 LSRNFTFVSLT*IRTFLRYHFYHV*IVHMLFFF---IYIFVLSLAPSIRHTKTSRIAY-P 228
LS +F+F L + +F I+H LFFF + +F LS S+ H + I + P
Sbjct: 127 LSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVF-LSFLFSLSHLLSLAILFLP 185
Query: 227 PGYRVFATI 201
RVF+T+
Sbjct: 186 LLLRVFSTL 194
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 316 YTCFFSLYIFLFYRSHHRFAIPRLR 242
YT FF L++F + S + PRLR
Sbjct: 74 YTYFFGLHLFSTFMSAYTVVEPRLR 98
>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 5.8
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 223 PGG*AMREVLVWRIDGASDRTKIYIKKKS 309
PGG ++ E+ GA +RTK+++ KKS
Sbjct: 246 PGGISLEEIQ--SSGGAWERTKVFVAKKS 272
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 25.0 bits (52), Expect = 7.6
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +3
Query: 174 YLIKCFNQVDGSKYTIARWVGYARSLGM 257
YL+ C++++ S ++A + YA GM
Sbjct: 469 YLVDCYHEMAASALSVATFTRYAAGGGM 496
>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 25.0 bits (52), Expect = 7.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 225 RWVGYARSLGMANRWCER*NKNIYKE 302
RW G R G N+W +R N+ +E
Sbjct: 270 RWDGIIRGNGFENKWFQRQNERKAQE 295
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,002,220
Number of Sequences: 5004
Number of extensions: 41886
Number of successful extensions: 105
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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