Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30256
(560 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF541948-2|AAN34651.1| 1006|Drosophila melanogaster pol protein ... 57 1e-08
AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse tran... 53 3e-07
X03431-2|CAB57796.1| 1059|Drosophila melanogaster protein ( Dros... 52 7e-07
AY180918-2|AAN87271.1| 1003|Drosophila melanogaster ORF2 protein. 52 7e-07
AF364550-2|AAK52058.1| 1065|Drosophila melanogaster RNA-directed... 52 7e-07
AJ009736-2|CAA08807.1| 1150|Drosophila melanogaster Pol protein ... 51 9e-07
AF492764-2|AAM11674.1| 849|Drosophila melanogaster pol protein ... 51 9e-07
AF222049-2|AAF36671.1| 1037|Drosophila melanogaster pol protein ... 51 9e-07
AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse tran... 50 3e-06
X01472-2|CAA25702.1| 1058|Drosophila melanogaster protein ( Dros... 49 5e-06
AF541947-2|AAN34648.1| 407|Drosophila melanogaster truncated po... 47 2e-05
X95908-1|CAA65152.1| 1494|Drosophila melanogaster orf protein. 46 5e-05
U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse transc... 45 8e-05
AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse tran... 44 1e-04
AF315785-1|AAK01366.1| 437|Drosophila melanogaster pol polyprot... 44 1e-04
AF364549-2|AAK52055.1| 1013|Drosophila melanogaster RNA-directed... 43 2e-04
X03734-1|CAA27371.1| 930|Drosophila melanogaster protein ( D. m... 42 6e-04
M12927-2|AAA70219.1| 1010|Drosophila melanogaster unknown protei... 42 6e-04
EF591043-2|ABQ84946.1| 1045|Drosophila melanogaster pol protein ... 42 6e-04
EF591042-2|ABQ84943.1| 1045|Drosophila melanogaster pol protein ... 42 6e-04
DQ887187-2|ABI48306.1| 1010|Drosophila melanogaster pol protein ... 42 6e-04
DQ887186-2|ABI48303.1| 1010|Drosophila melanogaster pol protein ... 42 6e-04
AF033821-2|AAC82604.1| 1463|Drosophila melanogaster Prgag-pol pr... 42 6e-04
Z27119-1|CAA81643.1| 1333|Drosophila melanogaster blastopia poly... 36 0.028
AY050234-1|AAK84933.1| 1026|Drosophila melanogaster SD02026p pro... 36 0.028
AY113457-1|AAM29462.1| 825|Drosophila melanogaster RE36839p pro... 33 0.20
X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros... 31 1.1
AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependen... 31 1.1
X14037-1|CAA32198.1| 1053|Drosophila melanogaster polyprotein pr... 29 4.3
>AF541948-2|AAN34651.1| 1006|Drosophila melanogaster pol protein
protein.
Length = 1006
Score = 57.2 bits (132), Expect = 1e-08
Identities = 30/62 (48%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = -1
Query: 224 GYRVFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFV-DKT 48
G F TIDL+K F+QI + + IPKTA TT G +E M GL+NA TFQ + D
Sbjct: 241 GCNYFTTIDLIKGFHQIEMDPESIPKTAFTTKTGHYEYTRMPFGLKNAPATFQRCMNDVL 300
Query: 47 RP 42
RP
Sbjct: 301 RP 302
>AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse
transcriptase protein.
Length = 1088
Score = 52.8 bits (121), Expect = 3e-07
Identities = 25/55 (45%), Positives = 33/55 (60%)
Frame = -1
Query: 218 RVFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFVD 54
+ F+T+DL F+QI + DD PKTA T G +E M GL+NA TFQ +D
Sbjct: 291 KYFSTLDLASGFHQIEMNPDDTPKTAFTVEGGHYEFIRMPFGLKNAPATFQRVMD 345
>X03431-2|CAB57796.1| 1059|Drosophila melanogaster protein (
Drosophila melanogastertransposable element 297. ).
Length = 1059
Score = 51.6 bits (118), Expect = 7e-07
Identities = 26/49 (53%), Positives = 31/49 (63%)
Frame = -1
Query: 212 FATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQ 66
F TIDL K F+QI + E+ I KTA +T G +E M GLRNA TFQ
Sbjct: 297 FTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQ 345
>AY180918-2|AAN87271.1| 1003|Drosophila melanogaster ORF2 protein.
Length = 1003
Score = 51.6 bits (118), Expect = 7e-07
Identities = 24/55 (43%), Positives = 33/55 (60%)
Frame = -1
Query: 218 RVFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFVD 54
+ F T+DL F+QI + E DIPKTA +T G +E + GL+NA FQ +D
Sbjct: 212 KYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMID 266
>AF364550-2|AAK52058.1| 1065|Drosophila melanogaster RNA-directed
DNA polymerase protein.
Length = 1065
Score = 51.6 bits (118), Expect = 7e-07
Identities = 26/49 (53%), Positives = 31/49 (63%)
Frame = -1
Query: 212 FATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQ 66
F TIDL K F+QI + E+ I KTA +T G FE M GL+NA TFQ
Sbjct: 286 FTTIDLAKGFHQIQMDENSIAKTAFSTKNGHFEYTRMPFGLKNAPATFQ 334
>AJ009736-2|CAA08807.1| 1150|Drosophila melanogaster Pol protein
protein.
Length = 1150
Score = 51.2 bits (117), Expect = 9e-07
Identities = 25/49 (51%), Positives = 31/49 (63%)
Frame = -1
Query: 212 FATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQ 66
F TIDL K F+QI + E+ I KTA +T G +E M GL+NA TFQ
Sbjct: 371 FTTIDLAKGFHQIQMDENSIAKTAFSTKHGHYEYTRMPFGLKNAPATFQ 419
>AF492764-2|AAM11674.1| 849|Drosophila melanogaster pol protein
protein.
Length = 849
Score = 51.2 bits (117), Expect = 9e-07
Identities = 24/49 (48%), Positives = 31/49 (63%)
Frame = -1
Query: 212 FATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQ 66
F TIDL K F+QI + + I KTA +T +G +E M GL+NA TFQ
Sbjct: 260 FTTIDLAKGFHQIEMDSESIAKTAFSTKYGHYEYTRMPFGLKNAPATFQ 308
>AF222049-2|AAF36671.1| 1037|Drosophila melanogaster pol protein
protein.
Length = 1037
Score = 51.2 bits (117), Expect = 9e-07
Identities = 24/55 (43%), Positives = 34/55 (61%)
Frame = -1
Query: 218 RVFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFVD 54
++F+T+DL K F QI + D+ KTA +T G +E M GLRNA TFQ ++
Sbjct: 221 KIFSTLDLAKGFYQIEMDNKDVHKTAFSTTSGHYEFLRMPFGLRNAPSTFQRLMN 275
>AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse
transcriptase protein.
Length = 1217
Score = 49.6 bits (113), Expect = 3e-06
Identities = 24/55 (43%), Positives = 32/55 (58%)
Frame = -1
Query: 218 RVFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFVD 54
+ F+T+DL F+QI + DI KTA T G +E M GL+NA TFQ +D
Sbjct: 405 KYFSTLDLTSGFHQIEMNPKDIAKTAFTVEGGHYEFTRMPFGLKNAPATFQRVMD 459
>X01472-2|CAA25702.1| 1058|Drosophila melanogaster protein (
Drosophila melanogastercopia-like element 17.6. ).
Length = 1058
Score = 48.8 bits (111), Expect = 5e-06
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = -1
Query: 212 FATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFV-DKTRP 42
F TIDL K F+QI + + + KTA +T G +E M GL+NA TFQ + D RP
Sbjct: 298 FTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRP 355
>AF541947-2|AAN34648.1| 407|Drosophila melanogaster truncated pol
protein protein.
Length = 407
Score = 47.2 bits (107), Expect = 2e-05
Identities = 24/53 (45%), Positives = 29/53 (54%)
Frame = -1
Query: 212 FATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFVD 54
F TIDL F+QI + D KTA T G +E M GL+NA TFQ +D
Sbjct: 275 FTTIDLASGFHQIQMNPRDASKTAFTVENGHYEFTRMPFGLKNAPATFQRVMD 327
>X95908-1|CAA65152.1| 1494|Drosophila melanogaster orf protein.
Length = 1494
Score = 45.6 bits (103), Expect = 5e-05
Identities = 22/55 (40%), Positives = 30/55 (54%)
Frame = -1
Query: 215 VFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFVDK 51
VF +DL F + V ++ I T+ TP G +E M GL+NA FQ FV+K
Sbjct: 801 VFTKLDLKNGFFHVHVKKESIKYTSFVTPLGQYEWLRMPFGLKNAPSVFQRFVNK 855
>U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse
transcriptase polyprotein protein.
Length = 1041
Score = 44.8 bits (101), Expect = 8e-05
Identities = 23/55 (41%), Positives = 31/55 (56%)
Frame = -1
Query: 218 RVFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFVD 54
R F T+DL AF+QI + E D KTA + G +E + GL+NA FQ +D
Sbjct: 277 RFFTTLDLKSAFHQILLAEKDRAKTAFSVGNGKYEFCRLPFGLKNAPSIFQRAID 331
>AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse
transcriptase-like polymeraseprotein.
Length = 1059
Score = 44.4 bits (100), Expect = 1e-04
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = -1
Query: 218 RVFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFVD 54
++F+ +DL F+QI + E DI KTA + G +E + GL+NA FQ +D
Sbjct: 284 KIFSVLDLKSGFHQILLKESDIEKTAFSINNGKYEFTRLPFGLKNAPSIFQRALD 338
>AF315785-1|AAK01366.1| 437|Drosophila melanogaster pol polyprotein
protein.
Length = 437
Score = 44.4 bits (100), Expect = 1e-04
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = -1
Query: 218 RVFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFVD 54
++F+ +DL F+QI + E DI KTA + G +E + GL+NA FQ +D
Sbjct: 127 KIFSVLDLKSGFHQILLKESDIEKTAFSINNGKYEFTRLPFGLKNAPSIFQRALD 181
>AF364549-2|AAK52055.1| 1013|Drosophila melanogaster RNA-directed
DNA polymerase protein.
Length = 1013
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/55 (38%), Positives = 30/55 (54%)
Frame = -1
Query: 218 RVFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFVD 54
+ F T+DL ++QI + E D KTA G +E + GLRNA+ FQ +D
Sbjct: 248 KYFTTLDLKSGYHQITLAERDREKTAFAVNGGKYEFRRLPFGLRNAASIFQRTID 302
>X03734-1|CAA27371.1| 930|Drosophila melanogaster protein ( D.
melanogaster retrotransposongypsy gene fragment for
reverse transcriptase-like enzyme.).
Length = 930
Score = 41.9 bits (94), Expect = 6e-04
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = -1
Query: 218 RVFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFVD 54
+ F T+DL ++QI + E D KT+ + G +E + GLRNAS FQ +D
Sbjct: 251 KFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALD 305
>M12927-2|AAA70219.1| 1010|Drosophila melanogaster unknown protein
protein.
Length = 1010
Score = 41.9 bits (94), Expect = 6e-04
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = -1
Query: 218 RVFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFVD 54
+ F T+DL ++QI + E D KT+ + G +E + GLRNAS FQ +D
Sbjct: 246 KFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALD 300
>EF591043-2|ABQ84946.1| 1045|Drosophila melanogaster pol protein
protein.
Length = 1045
Score = 41.9 bits (94), Expect = 6e-04
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = -1
Query: 218 RVFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFVD 54
+ F T+DL ++QI + E D KT+ + G +E + GLRNAS FQ +D
Sbjct: 281 KFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALD 335
>EF591042-2|ABQ84943.1| 1045|Drosophila melanogaster pol protein
protein.
Length = 1045
Score = 41.9 bits (94), Expect = 6e-04
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = -1
Query: 218 RVFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFVD 54
+ F T+DL ++QI + E D KT+ + G +E + GLRNAS FQ +D
Sbjct: 281 KFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALD 335
>DQ887187-2|ABI48306.1| 1010|Drosophila melanogaster pol protein
protein.
Length = 1010
Score = 41.9 bits (94), Expect = 6e-04
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = -1
Query: 218 RVFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFVD 54
+ F T+DL ++QI + E D KT+ + G +E + GLRNAS FQ +D
Sbjct: 246 KFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALD 300
>DQ887186-2|ABI48303.1| 1010|Drosophila melanogaster pol protein
protein.
Length = 1010
Score = 41.9 bits (94), Expect = 6e-04
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = -1
Query: 218 RVFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFVD 54
+ F T+DL ++QI + E D KT+ + G +E + GLRNAS FQ +D
Sbjct: 246 KFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALD 300
>AF033821-2|AAC82604.1| 1463|Drosophila melanogaster Prgag-pol
protein.
Length = 1463
Score = 41.9 bits (94), Expect = 6e-04
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = -1
Query: 218 RVFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFVD 54
+ F T+DL ++QI + E D KT+ + G +E + GLRNAS FQ +D
Sbjct: 699 KFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALD 753
>Z27119-1|CAA81643.1| 1333|Drosophila melanogaster blastopia
polyprotein protein.
Length = 1333
Score = 36.3 bits (80), Expect = 0.028
Identities = 20/52 (38%), Positives = 24/52 (46%)
Frame = -1
Query: 212 FATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFV 57
F T+DL F + V E P TA T GLFE G +N+ F FV
Sbjct: 574 FTTMDLQNGFFHVAVEEASKPYTAFVTREGLFEFNKAPFGFKNSPAAFIRFV 625
>AY050234-1|AAK84933.1| 1026|Drosophila melanogaster SD02026p
protein.
Length = 1026
Score = 36.3 bits (80), Expect = 0.028
Identities = 20/52 (38%), Positives = 24/52 (46%)
Frame = -1
Query: 212 FATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFV 57
F T+DL F + V E P TA T GLFE G +N+ F FV
Sbjct: 268 FTTMDLQNGFFHVAVEEASKPYTAFVTREGLFEFNKAPFGFKNSPAAFIRFV 319
>AY113457-1|AAM29462.1| 825|Drosophila melanogaster RE36839p
protein.
Length = 825
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = -1
Query: 218 RVFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFV 57
+ F+ +DL+ F+QI + ED T+ +T G + + GL+ A +FQ +
Sbjct: 298 KYFSCLDLMSGFHQIELEEDSRNITSFSTSSGSYRFTRLPYGLKIAPNSFQRMM 351
>X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein (
Drosophila retrotransposon412 genome. ).
Length = 1237
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -1
Query: 218 RVFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFV 57
+ F+ +DL+ F+QI + E T+ +T G + + GL+ A +FQ +
Sbjct: 404 KYFSCLDLMSGFHQIELDEGSRDITSFSTSNGSYRFTRLPFGLKIAPNSFQRMM 457
>AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependent
DNA polymerase protein.
Length = 1000
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -1
Query: 218 RVFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFV 57
+ F+ +DL+ F+QI + E T+ +T G + + GL+ A +FQ +
Sbjct: 167 KYFSCLDLMSGFHQIELDEGSRDITSFSTSNGSYRFTRLPFGLKIAPNSFQRMM 220
>X14037-1|CAA32198.1| 1053|Drosophila melanogaster polyprotein
protein.
Length = 1053
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -1
Query: 248 TSRIAYPPGYRVFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXP 108
+ +IA G F +D+ F+QIP+ + + TA P GL P
Sbjct: 531 SDQIARLRGANYFTCLDMASGFHQIPIHPESVEYTAF-VPDGLKNAP 576
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,696,180
Number of Sequences: 53049
Number of extensions: 382966
Number of successful extensions: 1016
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2172596895
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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