Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30256
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    29   2.3  
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    29   2.3  
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    29   2.3  
Z75533-3|CAA99822.1|  868|Caenorhabditis elegans Hypothetical pr...    28   4.0  
Z93388-1|CAB07658.1|  355|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
            protein precursor protein.
          Length = 2272

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = -1

Query: 224  GYRVFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFVDK 51
            G +++   D++  F QIP+ E     TA      LFE   +  GL  +   FQ  +++
Sbjct: 1110 GKKLYTVFDMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEE 1167


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
            protein, isoforma protein.
          Length = 2175

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = -1

Query: 224  GYRVFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFVDK 51
            G +++   D++  F QIP+ E     TA      LFE   +  GL  +   FQ  +++
Sbjct: 1013 GKKLYTVFDMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEE 1070


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
            protein, isoformb protein.
          Length = 2186

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = -1

Query: 224  GYRVFATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEXPYMTIGLRNASRTFQNFVDK 51
            G +++   D++  F QIP+ E     TA      LFE   +  GL  +   FQ  +++
Sbjct: 1024 GKKLYTVFDMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEE 1081


>Z75533-3|CAA99822.1|  868|Caenorhabditis elegans Hypothetical
           protein C54G4.4 protein.
          Length = 868

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -1

Query: 530 FLIFVVLLCSA-SYLIHSE*IYAIYTNKILNNYQTL 426
           +++FV LL S+ SYLIH+     I TN   NN QTL
Sbjct: 82  YILFVFLLLSSRSYLIHN--TPPIRTNTQYNNIQTL 115


>Z93388-1|CAB07658.1|  355|Caenorhabditis elegans Hypothetical
           protein T10C6.1 protein.
          Length = 355

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -2

Query: 403 TYNYPEILHSSH*LEFELFYDITFTTCELYTCFFSLYIFLFY 278
           ++ YP++   +  + ++ F  + F+TC L   F S Y+ LFY
Sbjct: 191 SFFYPQLADGTKVINWDSFIGMAFSTCIL---FGSEYLMLFY 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,839,302
Number of Sequences: 27780
Number of extensions: 227428
Number of successful extensions: 605
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)