Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30256
         (560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   8.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   8.5  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   8.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.5  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 396 IIPKFYIRLINLNSNFFTISLLPRVNCTHAFFLY 295
           I+P  YIR+    S  ++I +   ++C     LY
Sbjct: 134 IMPNVYIRIFPNGSVLYSIRISLTLSCPMNLKLY 167


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 396 IIPKFYIRLINLNSNFFTISLLPRVNCTHAFFLY 295
           I+P  YIR+    S  ++I +   ++C     LY
Sbjct: 134 IMPNVYIRIFPNGSVLYSIRISLTLSCPMNLKLY 167


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 290 IFVLSLAPSIRHTKTSRIAYPP 225
           I ++S  P   +TK + + YPP
Sbjct: 168 IALISAIPFAIYTKVNLVEYPP 189


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 105 VRXLKKSKRGCYRCF 149
           +  +KK  +G Y+CF
Sbjct: 357 IESVKKEDKGMYQCF 371


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,059
Number of Sequences: 438
Number of extensions: 2966
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)