Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30256
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g56145.1 68414.m06448 leucine-rich repeat family protein / pr...    30   1.2  
At1g48560.1 68414.m05430 expressed protein                             29   2.8  
At3g26290.1 68416.m03280 cytochrome P450 71B26, putative (CYP71B...    27   6.5  

>At1g56145.1 68414.m06448 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam profiles:
           PF00069: Eukaryotic protein kinase domain, multiple
           PF00560: Leucine Rich Repeat
          Length = 1012

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -3

Query: 378 IRLINLNSNFFTISLLPRV-NCTHAFFLYIYFCSIARTIDSPYQDFAHSLPTWLSCI 211
           +R + ++ N F+ SL P + NCT    +YI    ++  I S + +F +    W++ I
Sbjct: 168 LRSLAIDMNNFSGSLPPEIGNCTRLVKMYIGSSGLSGEIPSSFANFVNLEEAWINDI 224


>At1g48560.1 68414.m05430 expressed protein
          Length = 643

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
 Frame = -3

Query: 438 LSNFVTL*SLLKPTIIPKFYIRLINLNSNFFTISLLPR-----VN-CTHAFFLYIYF--- 286
           L   V+   L+ P  +PK ++R  + + +F T+    R     VN    A+F  I F   
Sbjct: 30  LGVLVSFFGLMDPRYVPKPFLR--SFDRDFKTLISDSRWIRRFVNRALRAYFWNISFGLW 87

Query: 285 CSIARTIDSPYQDFAHSLP 229
           CS    IDSPY D  +SLP
Sbjct: 88  CSCQPRIDSPYLDRENSLP 106


>At3g26290.1 68416.m03280 cytochrome P450 71B26, putative (CYP71B26)
           identical to cytochrome P450 71B26 (SP:Q9LTL0)
           [Arabidopsis thaliana]; contains Pfam profile: PF00067
           cytochrome P450
          Length = 500

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 320 IVHMLFFFIYIFVLSLAPSIRHTKTSRIAYPPGYRVFATI 201
           I+ +LFF I++ + +      H K  RI  PPG+ +   +
Sbjct: 6   ILSLLFFIIFLLLAAFKRK-NHGKHRRIPSPPGFPIIGNL 44


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,833,369
Number of Sequences: 28952
Number of extensions: 193408
Number of successful extensions: 417
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)