Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30255
         (466 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    22   2.4  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   5.6  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    20   9.8  

>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 102 KAIIALDAKWHRDCFTCMKCRNPVTDSTFSVMENQPLC 215
           K I AL+  W  +C +    + P+T  T +   + P C
Sbjct: 16  KNISALNGAWRWECKSNYCQKAPITPDTEATGLSLPAC 53


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -2

Query: 108 WLYRRLDFRTPCSEWRTC 55
           WLY      T C+ + TC
Sbjct: 101 WLYGIFGHETSCTRYWTC 118


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 20.2 bits (40), Expect = 9.8
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -1

Query: 163 LHFMHVKQSRCHLASSAMMALSTIGFPHPLQRVANLSA*QSEQ 35
           L+ +H  +   HL          I FP P  +   ++A Q+E+
Sbjct: 146 LNSLHKYKPTVHLVRVGTEPRRVISFPFPETQFIAVTAYQNEE 188


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,899
Number of Sequences: 336
Number of extensions: 2079
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10721526
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)